Hb_001322_030

Information

Type -
Description -
Location Contig1322: 42524-44104
Sequence    

Annotation

kegg
ID rcu:RCOM_0191120
description triacylglycerol lipase, putative
nr
ID XP_002532349.1
description triacylglycerol lipase, putative [Ricinus communis]
swissprot
ID O23522
description Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2
trembl
ID B9T280
description Triacylglycerol lipase, putative OS=Ricinus communis GN=RCOM_0191120 PE=4 SV=1
Gene Ontology
ID GO:0008970
description phospholipase a1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09258: 42461-44237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_030 0.0 - - triacylglycerol lipase, putative [Ricinus communis]
2 Hb_007145_010 0.1224948563 - - ammonium transporter 3.1-like protein [Camellia sinensis]
3 Hb_001226_010 0.1844732968 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
4 Hb_011972_010 0.1914873501 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001470_070 0.2325810372 - - metal ion binding protein, putative [Ricinus communis]
6 Hb_034904_010 0.2391849836 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
7 Hb_128486_010 0.240560702 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
8 Hb_000352_200 0.259507472 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
9 Hb_002675_200 0.2784417895 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
10 Hb_089140_110 0.2808719264 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_005144_190 0.2817018463 - - hypothetical protein F383_09558 [Gossypium arboreum]
12 Hb_106552_070 0.28508581 - - conserved hypothetical protein [Ricinus communis]
13 Hb_103739_010 0.2859690159 - - sodium/hydrogen exchanger, putative [Ricinus communis]
14 Hb_040359_010 0.2884377679 - - triacylglycerol lipase, putative [Ricinus communis]
15 Hb_000155_090 0.289540419 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
16 Hb_001269_460 0.2944680635 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
17 Hb_003633_100 0.2960973392 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
18 Hb_006018_050 0.3038116543 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
19 Hb_011457_030 0.3103107603 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
20 Hb_007441_170 0.313943022 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]

Gene co-expression network

sample Hb_001322_030 Hb_001322_030 Hb_007145_010 Hb_007145_010 Hb_001322_030--Hb_007145_010 Hb_001226_010 Hb_001226_010 Hb_001322_030--Hb_001226_010 Hb_011972_010 Hb_011972_010 Hb_001322_030--Hb_011972_010 Hb_001470_070 Hb_001470_070 Hb_001322_030--Hb_001470_070 Hb_034904_010 Hb_034904_010 Hb_001322_030--Hb_034904_010 Hb_128486_010 Hb_128486_010 Hb_001322_030--Hb_128486_010 Hb_007145_010--Hb_001470_070 Hb_007145_010--Hb_001226_010 Hb_007145_010--Hb_011972_010 Hb_007145_010--Hb_034904_010 Hb_040359_010 Hb_040359_010 Hb_007145_010--Hb_040359_010 Hb_001226_010--Hb_034904_010 Hb_001437_160 Hb_001437_160 Hb_001226_010--Hb_001437_160 Hb_000740_020 Hb_000740_020 Hb_001226_010--Hb_000740_020 Hb_103739_010 Hb_103739_010 Hb_001226_010--Hb_103739_010 Hb_000352_200 Hb_000352_200 Hb_011972_010--Hb_000352_200 Hb_011972_010--Hb_001470_070 Hb_002675_200 Hb_002675_200 Hb_011972_010--Hb_002675_200 Hb_001269_460 Hb_001269_460 Hb_011972_010--Hb_001269_460 Hb_001470_070--Hb_002675_200 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001470_070--Hb_034904_010 Hb_001143_150 Hb_001143_150 Hb_034904_010--Hb_001143_150 Hb_034904_010--Hb_005144_190 Hb_003633_100 Hb_003633_100 Hb_128486_010--Hb_003633_100 Hb_031822_010 Hb_031822_010 Hb_128486_010--Hb_031822_010 Hb_089140_110 Hb_089140_110 Hb_128486_010--Hb_089140_110 Hb_000072_190 Hb_000072_190 Hb_128486_010--Hb_000072_190 Hb_128486_010--Hb_000352_200 Hb_000020_100 Hb_000020_100 Hb_128486_010--Hb_000020_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0258248 57.0547 94.8139 85.5607 0.0120917 0.0482861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.441018 166.893 6.05262 1.98373 14.0151

CAGE analysis