Hb_003633_100

Information

Type -
Description -
Location Contig3633: 86419-88095
Sequence    

Annotation

kegg
ID gmx:100789542
description uncharacterized LOC100789542
nr
ID ADR30790.1
description hypoia-responsive family protein 1 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I1SN87
description Hypoia-responsive family protein 1 OS=Hevea brasiliensis GN=HR1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description hypoxia induced protein conserved region containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37368: 86412-88128 , PASA_asmbl_37369: 86815-87430
cDNA
(Sanger)
(ID:Location)		 005_O10.ab1: 86412-88128 , 005_P03.ab1: 86412-88128 , 020_O07.ab1: 86414-88075 , 023_K17.ab1: 86412-88002 , 044_C06.ab1: 86414-87974

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_100 0.0 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
2 Hb_089140_110 0.1138905398 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_031822_010 0.1566781977 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
4 Hb_128486_010 0.1613538871 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
5 Hb_005701_110 0.1780829123 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
6 Hb_006018_050 0.1796583854 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
7 Hb_000072_190 0.1849098602 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
8 Hb_101146_010 0.1886387136 - - PREDICTED: peregrin-like [Jatropha curcas]
9 Hb_089140_090 0.191521141 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
10 Hb_004116_120 0.1952014727 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
11 Hb_004046_060 0.1997106323 - - PREDICTED: protein CDI [Jatropha curcas]
12 Hb_004994_250 0.2029479941 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
13 Hb_014508_010 0.2088081294 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
14 Hb_000740_150 0.2089779009 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
15 Hb_000020_100 0.2107767141 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
16 Hb_033594_040 0.2126714204 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
17 Hb_008768_020 0.2136610241 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
18 Hb_002217_190 0.2151527267 - - invertase [Hevea brasiliensis]
19 Hb_000717_040 0.216283766 transcription factor TF Family: B3 hypothetical protein POPTR_0015s03590g [Populus trichocarpa]
20 Hb_001114_170 0.2177904245 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003633_100 Hb_003633_100 Hb_089140_110 Hb_089140_110 Hb_003633_100--Hb_089140_110 Hb_031822_010 Hb_031822_010 Hb_003633_100--Hb_031822_010 Hb_128486_010 Hb_128486_010 Hb_003633_100--Hb_128486_010 Hb_005701_110 Hb_005701_110 Hb_003633_100--Hb_005701_110 Hb_006018_050 Hb_006018_050 Hb_003633_100--Hb_006018_050 Hb_000072_190 Hb_000072_190 Hb_003633_100--Hb_000072_190 Hb_089140_110--Hb_000072_190 Hb_089140_110--Hb_031822_010 Hb_101146_010 Hb_101146_010 Hb_089140_110--Hb_101146_010 Hb_089140_110--Hb_005701_110 Hb_089140_110--Hb_006018_050 Hb_031822_010--Hb_000072_190 Hb_003147_070 Hb_003147_070 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_013358_020 Hb_013358_020 Hb_031822_010--Hb_013358_020 Hb_128486_010--Hb_031822_010 Hb_128486_010--Hb_089140_110 Hb_128486_010--Hb_000072_190 Hb_000352_200 Hb_000352_200 Hb_128486_010--Hb_000352_200 Hb_000020_100 Hb_000020_100 Hb_128486_010--Hb_000020_100 Hb_012545_030 Hb_012545_030 Hb_005701_110--Hb_012545_030 Hb_001155_050 Hb_001155_050 Hb_005701_110--Hb_001155_050 Hb_000984_260 Hb_000984_260 Hb_005701_110--Hb_000984_260 Hb_006120_150 Hb_006120_150 Hb_005701_110--Hb_006120_150 Hb_015778_040 Hb_015778_040 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020 Hb_006018_050--Hb_000072_190 Hb_001579_070 Hb_001579_070 Hb_006018_050--Hb_001579_070 Hb_006018_050--Hb_031822_010 Hb_000162_130 Hb_000162_130 Hb_006018_050--Hb_000162_130 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5093 380.157 857.44 638.895 7.92429 17.4256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.334 412.497 69.3246 100.871 47.4324

CAGE analysis