Hb_089140_110

Information

Type -
Description -
Location Contig89140: 72503-77583
Sequence    

Annotation

kegg
ID rcu:RCOM_0712110
description hypothetical protein
nr
ID XP_012077041.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KNN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07481 PE=4 SV=1
Gene Ontology
ID GO:0043231
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61682: 72834-77751 , PASA_asmbl_61684: 75014-75210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_110 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_003633_100 0.1138905398 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
3 Hb_000072_190 0.1524061829 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
4 Hb_031822_010 0.1564528721 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
5 Hb_101146_010 0.1626497261 - - PREDICTED: peregrin-like [Jatropha curcas]
6 Hb_005701_110 0.1691987735 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
7 Hb_006018_050 0.1703647866 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
8 Hb_084849_010 0.1704099654 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015807_160 0.1735586091 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
10 Hb_013358_020 0.1777448387 - - ccr4-associated factor, putative [Ricinus communis]
11 Hb_089140_090 0.1781748472 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
12 Hb_001114_170 0.1800661953 - - conserved hypothetical protein [Ricinus communis]
13 Hb_128486_010 0.1807647339 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
14 Hb_000984_260 0.1810564834 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
15 Hb_009557_030 0.1920119817 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
16 Hb_003147_070 0.1927693609 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
17 Hb_093458_010 0.1939354098 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
18 Hb_000645_200 0.1943408632 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
19 Hb_008768_020 0.1943944385 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
20 Hb_002325_060 0.1954093166 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]

Gene co-expression network

sample Hb_089140_110 Hb_089140_110 Hb_003633_100 Hb_003633_100 Hb_089140_110--Hb_003633_100 Hb_000072_190 Hb_000072_190 Hb_089140_110--Hb_000072_190 Hb_031822_010 Hb_031822_010 Hb_089140_110--Hb_031822_010 Hb_101146_010 Hb_101146_010 Hb_089140_110--Hb_101146_010 Hb_005701_110 Hb_005701_110 Hb_089140_110--Hb_005701_110 Hb_006018_050 Hb_006018_050 Hb_089140_110--Hb_006018_050 Hb_003633_100--Hb_031822_010 Hb_128486_010 Hb_128486_010 Hb_003633_100--Hb_128486_010 Hb_003633_100--Hb_005701_110 Hb_003633_100--Hb_006018_050 Hb_003633_100--Hb_000072_190 Hb_013358_020 Hb_013358_020 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_000072_190--Hb_031822_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_000072_190--Hb_006018_050 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200 Hb_003147_070 Hb_003147_070 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_031822_010--Hb_013358_020 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_000757_130 Hb_000757_130 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_001114_170 Hb_001114_170 Hb_101146_010--Hb_001114_170 Hb_101146_010--Hb_000046_310 Hb_012545_030 Hb_012545_030 Hb_005701_110--Hb_012545_030 Hb_001155_050 Hb_001155_050 Hb_005701_110--Hb_001155_050 Hb_000984_260 Hb_000984_260 Hb_005701_110--Hb_000984_260 Hb_006120_150 Hb_006120_150 Hb_005701_110--Hb_006120_150 Hb_015778_040 Hb_015778_040 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020 Hb_001579_070 Hb_001579_070 Hb_006018_050--Hb_001579_070 Hb_006018_050--Hb_031822_010 Hb_000162_130 Hb_000162_130 Hb_006018_050--Hb_000162_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.718273 8.38735 12.8785 11.0191 0.786908 0.482974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02382 9.41285 1.26048 2.17385 2.1222

CAGE analysis