Hb_001269_460

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1269: 502944-504756
Sequence    

Annotation

kegg
ID tcc:TCM_027435
description WRKY DNA-binding protein 40, putative isoform 1
nr
ID XP_012067500.1
description PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
swissprot
ID Q9SAH7
description Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1
trembl
ID S5CKF6
description Uncharacterized protein OS=Jatropha curcas GN=WRKY27 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08215: 503127-504740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_460 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
2 Hb_040359_010 0.1543367352 - - triacylglycerol lipase, putative [Ricinus communis]
3 Hb_006018_050 0.2042854447 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
4 Hb_003938_030 0.2124018033 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
5 Hb_027445_040 0.2145364446 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
6 Hb_003633_100 0.221497207 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
7 Hb_105226_010 0.2370817862 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
8 Hb_128486_010 0.2398175985 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
9 Hb_008878_010 0.242731655 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
10 Hb_155946_030 0.2477137648 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
11 Hb_002675_200 0.2555299422 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
12 Hb_007382_090 0.2576065529 - - protein binding protein, putative [Ricinus communis]
13 Hb_002374_200 0.2582188182 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
14 Hb_011972_010 0.2583894676 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008115_030 0.2587310567 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
16 Hb_008406_080 0.2625425333 - - Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis]
17 Hb_001007_090 0.2632670496 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
18 Hb_000162_130 0.2638014042 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001470_070 0.2641283504 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_004116_120 0.2684458521 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_460 Hb_001269_460 Hb_040359_010 Hb_040359_010 Hb_001269_460--Hb_040359_010 Hb_006018_050 Hb_006018_050 Hb_001269_460--Hb_006018_050 Hb_003938_030 Hb_003938_030 Hb_001269_460--Hb_003938_030 Hb_027445_040 Hb_027445_040 Hb_001269_460--Hb_027445_040 Hb_003633_100 Hb_003633_100 Hb_001269_460--Hb_003633_100 Hb_105226_010 Hb_105226_010 Hb_001269_460--Hb_105226_010 Hb_040359_010--Hb_105226_010 Hb_040359_010--Hb_006018_050 Hb_040359_010--Hb_003938_030 Hb_002675_200 Hb_002675_200 Hb_040359_010--Hb_002675_200 Hb_001470_070 Hb_001470_070 Hb_040359_010--Hb_001470_070 Hb_000072_190 Hb_000072_190 Hb_006018_050--Hb_000072_190 Hb_001579_070 Hb_001579_070 Hb_006018_050--Hb_001579_070 Hb_031822_010 Hb_031822_010 Hb_006018_050--Hb_031822_010 Hb_089140_110 Hb_089140_110 Hb_006018_050--Hb_089140_110 Hb_000162_130 Hb_000162_130 Hb_006018_050--Hb_000162_130 Hb_006018_050--Hb_003633_100 Hb_003938_030--Hb_105226_010 Hb_000540_090 Hb_000540_090 Hb_003938_030--Hb_000540_090 Hb_083822_010 Hb_083822_010 Hb_003938_030--Hb_083822_010 Hb_000375_230 Hb_000375_230 Hb_003938_030--Hb_000375_230 Hb_008173_060 Hb_008173_060 Hb_027445_040--Hb_008173_060 Hb_005375_060 Hb_005375_060 Hb_027445_040--Hb_005375_060 Hb_000462_080 Hb_000462_080 Hb_027445_040--Hb_000462_080 Hb_007163_080 Hb_007163_080 Hb_027445_040--Hb_007163_080 Hb_005348_090 Hb_005348_090 Hb_027445_040--Hb_005348_090 Hb_004452_090 Hb_004452_090 Hb_027445_040--Hb_004452_090 Hb_003633_100--Hb_089140_110 Hb_003633_100--Hb_031822_010 Hb_128486_010 Hb_128486_010 Hb_003633_100--Hb_128486_010 Hb_005701_110 Hb_005701_110 Hb_003633_100--Hb_005701_110 Hb_003633_100--Hb_000072_190 Hb_105226_010--Hb_000540_090 Hb_105226_010--Hb_001470_070 Hb_002374_200 Hb_002374_200 Hb_105226_010--Hb_002374_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.331012 96.1725 200.711 66.084 0 0.0998167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0224 76.8662 6.93133 7.91028 0.482116

CAGE analysis