Hb_083822_010

Information

Type -
Description -
Location Contig83822: 12-874
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061ELN1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_017814 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083822_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000392_460 0.1034694441 - - Pectate lyase precursor, putative [Ricinus communis]
3 Hb_021346_040 0.1651338257 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
4 Hb_003938_030 0.1928970651 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
5 Hb_000375_230 0.2033393341 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
6 Hb_001623_310 0.2271164925 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
7 Hb_000853_040 0.2521124888 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025669_030 0.2532875168 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
9 Hb_105226_010 0.266968153 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
10 Hb_011505_010 0.3032112938 - - -
11 Hb_040359_010 0.3042763067 - - triacylglycerol lipase, putative [Ricinus communis]
12 Hb_001269_460 0.3178891753 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
13 Hb_000540_090 0.3179897356 - - PREDICTED: chitinase 2-like [Jatropha curcas]
14 Hb_167452_010 0.3187828902 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
15 Hb_004129_080 0.3214767477 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
16 Hb_059481_010 0.3265270522 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
17 Hb_005694_100 0.3405645533 - - PREDICTED: calcium-binding protein KIC-like [Populus euphratica]
18 Hb_011972_010 0.3509109683 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008221_020 0.3525146682 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
20 Hb_000069_580 0.356023715 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_083822_010 Hb_083822_010 Hb_000392_460 Hb_000392_460 Hb_083822_010--Hb_000392_460 Hb_021346_040 Hb_021346_040 Hb_083822_010--Hb_021346_040 Hb_003938_030 Hb_003938_030 Hb_083822_010--Hb_003938_030 Hb_000375_230 Hb_000375_230 Hb_083822_010--Hb_000375_230 Hb_001623_310 Hb_001623_310 Hb_083822_010--Hb_001623_310 Hb_000853_040 Hb_000853_040 Hb_083822_010--Hb_000853_040 Hb_000392_460--Hb_021346_040 Hb_000392_460--Hb_000853_040 Hb_000392_460--Hb_001623_310 Hb_025669_030 Hb_025669_030 Hb_000392_460--Hb_025669_030 Hb_000392_460--Hb_003938_030 Hb_021346_040--Hb_000853_040 Hb_167452_010 Hb_167452_010 Hb_021346_040--Hb_167452_010 Hb_021346_040--Hb_003938_030 Hb_021346_040--Hb_025669_030 Hb_105226_010 Hb_105226_010 Hb_003938_030--Hb_105226_010 Hb_000540_090 Hb_000540_090 Hb_003938_030--Hb_000540_090 Hb_040359_010 Hb_040359_010 Hb_003938_030--Hb_040359_010 Hb_001269_460 Hb_001269_460 Hb_003938_030--Hb_001269_460 Hb_003938_030--Hb_000375_230 Hb_000375_230--Hb_000540_090 Hb_000815_180 Hb_000815_180 Hb_000375_230--Hb_000815_180 Hb_156637_010 Hb_156637_010 Hb_000375_230--Hb_156637_010 Hb_011549_020 Hb_011549_020 Hb_000375_230--Hb_011549_020 Hb_001623_310--Hb_025669_030 Hb_001623_310--Hb_021346_040 Hb_171062_010 Hb_171062_010 Hb_001623_310--Hb_171062_010 Hb_059481_010 Hb_059481_010 Hb_001623_310--Hb_059481_010 Hb_000853_040--Hb_167452_010 Hb_000853_040--Hb_003938_030 Hb_001104_050 Hb_001104_050 Hb_000853_040--Hb_001104_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0479014 0.112675 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0516939 0 0 0

CAGE analysis