Hb_059481_010

Information

Type -
Description -
Location Contig59481: 974-2472
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06860g
description POPTRDRAFT_564026; hypothetical protein
nr
ID XP_002312158.2
description hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID B9HHP9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06860g PE=3 SV=2
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059481_010 0.0 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
2 Hb_002874_210 0.2151320126 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001007_090 0.2358668204 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
4 Hb_005694_070 0.2370263884 - - kinase, putative [Ricinus communis]
5 Hb_123475_020 0.2405360555 - - -
6 Hb_000042_020 0.2452496323 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_002447_160 0.2562372402 - - -
8 Hb_000122_090 0.257019256 - - hypothetical protein RCOM_0688100 [Ricinus communis]
9 Hb_027445_040 0.2583554337 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
10 Hb_000521_190 0.2591048155 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
11 Hb_004586_310 0.2596431291 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008115_030 0.2636235872 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
13 Hb_114292_010 0.2672185349 - - conserved hypothetical protein [Ricinus communis]
14 Hb_116420_050 0.2698864346 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
15 Hb_006120_120 0.2699378705 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000340_070 0.2712678353 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
17 Hb_028639_040 0.2717483794 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
18 Hb_001022_020 0.2723225491 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
19 Hb_008878_010 0.2738328542 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
20 Hb_001143_200 0.2744261298 transcription factor TF Family: NAC NAC domain protein [Glycine max]

Gene co-expression network

sample Hb_059481_010 Hb_059481_010 Hb_002874_210 Hb_002874_210 Hb_059481_010--Hb_002874_210 Hb_001007_090 Hb_001007_090 Hb_059481_010--Hb_001007_090 Hb_005694_070 Hb_005694_070 Hb_059481_010--Hb_005694_070 Hb_123475_020 Hb_123475_020 Hb_059481_010--Hb_123475_020 Hb_000042_020 Hb_000042_020 Hb_059481_010--Hb_000042_020 Hb_002447_160 Hb_002447_160 Hb_059481_010--Hb_002447_160 Hb_002874_210--Hb_123475_020 Hb_000340_070 Hb_000340_070 Hb_002874_210--Hb_000340_070 Hb_000574_270 Hb_000574_270 Hb_002874_210--Hb_000574_270 Hb_000604_080 Hb_000604_080 Hb_002874_210--Hb_000604_080 Hb_000953_180 Hb_000953_180 Hb_002874_210--Hb_000953_180 Hb_000365_110 Hb_000365_110 Hb_002874_210--Hb_000365_110 Hb_008878_010 Hb_008878_010 Hb_001007_090--Hb_008878_010 Hb_000521_190 Hb_000521_190 Hb_001007_090--Hb_000521_190 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_000866_430 Hb_000866_430 Hb_001007_090--Hb_000866_430 Hb_116420_050 Hb_116420_050 Hb_001007_090--Hb_116420_050 Hb_005686_100 Hb_005686_100 Hb_005694_070--Hb_005686_100 Hb_004586_310 Hb_004586_310 Hb_005694_070--Hb_004586_310 Hb_005694_070--Hb_001007_090 Hb_005694_070--Hb_000521_190 Hb_005694_070--Hb_123475_020 Hb_034310_010 Hb_034310_010 Hb_123475_020--Hb_034310_010 Hb_028639_040 Hb_028639_040 Hb_123475_020--Hb_028639_040 Hb_004495_010 Hb_004495_010 Hb_123475_020--Hb_004495_010 Hb_107174_010 Hb_107174_010 Hb_123475_020--Hb_107174_010 Hb_123475_020--Hb_005686_100 Hb_001143_200 Hb_001143_200 Hb_000042_020--Hb_001143_200 Hb_000280_100 Hb_000280_100 Hb_000042_020--Hb_000280_100 Hb_000042_020--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000042_020--Hb_027065_010 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_127372_010 Hb_127372_010 Hb_000042_020--Hb_127372_010 Hb_003768_060 Hb_003768_060 Hb_002447_160--Hb_003768_060 Hb_001004_050 Hb_001004_050 Hb_002447_160--Hb_001004_050 Hb_002631_220 Hb_002631_220 Hb_002447_160--Hb_002631_220 Hb_000787_010 Hb_000787_010 Hb_002447_160--Hb_000787_010 Hb_004021_090 Hb_004021_090 Hb_002447_160--Hb_004021_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0605973 0.17892 0.685515 0.0546908 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0871225 0 0.0358704 0

CAGE analysis