Hb_002631_220

Information

Type -
Description -
Location Contig2631: 174956-176957
Sequence    

Annotation

kegg
ID rcu:RCOM_1574710
description Patellin-4, putative
nr
ID XP_002513365.1
description Patellin-4, putative [Ricinus communis]
swissprot
ID Q94C59
description Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2
trembl
ID B9RHZ6
description Patellin-4, putative OS=Ricinus communis GN=RCOM_1574710 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sec14p-like phosphatidylinositol transfer family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_220 0.0 - - Patellin-4, putative [Ricinus communis]
2 Hb_001214_150 0.2171657949 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
3 Hb_004945_020 0.2361080254 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
4 Hb_002447_160 0.2374864568 - - -
5 Hb_089140_010 0.2552455998 - - -
6 Hb_007592_020 0.2572618457 - - acyltransferase, putative [Ricinus communis]
7 Hb_126648_010 0.2647484346 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
8 Hb_001711_010 0.2675716303 - - -
9 Hb_005883_070 0.27021864 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
10 Hb_003096_020 0.278222202 - - -
11 Hb_095471_020 0.2925132392 - - -
12 Hb_005548_030 0.3046923294 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
13 Hb_000516_070 0.3066165011 - - -
14 Hb_004125_060 0.3094241661 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003902_060 0.3100830233 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
16 Hb_000692_210 0.312043858 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
17 Hb_005000_140 0.3120656624 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
18 Hb_000012_210 0.3128214112 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
19 Hb_005273_020 0.3130376264 - - -
20 Hb_007136_010 0.3161271609 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_220 Hb_002631_220 Hb_001214_150 Hb_001214_150 Hb_002631_220--Hb_001214_150 Hb_004945_020 Hb_004945_020 Hb_002631_220--Hb_004945_020 Hb_002447_160 Hb_002447_160 Hb_002631_220--Hb_002447_160 Hb_089140_010 Hb_089140_010 Hb_002631_220--Hb_089140_010 Hb_007592_020 Hb_007592_020 Hb_002631_220--Hb_007592_020 Hb_126648_010 Hb_126648_010 Hb_002631_220--Hb_126648_010 Hb_001214_150--Hb_004945_020 Hb_005946_120 Hb_005946_120 Hb_001214_150--Hb_005946_120 Hb_101733_040 Hb_101733_040 Hb_001214_150--Hb_101733_040 Hb_171718_020 Hb_171718_020 Hb_001214_150--Hb_171718_020 Hb_025214_090 Hb_025214_090 Hb_001214_150--Hb_025214_090 Hb_004945_020--Hb_005946_120 Hb_005675_060 Hb_005675_060 Hb_004945_020--Hb_005675_060 Hb_131864_030 Hb_131864_030 Hb_004945_020--Hb_131864_030 Hb_004945_020--Hb_126648_010 Hb_003768_060 Hb_003768_060 Hb_002447_160--Hb_003768_060 Hb_001004_050 Hb_001004_050 Hb_002447_160--Hb_001004_050 Hb_059481_010 Hb_059481_010 Hb_002447_160--Hb_059481_010 Hb_000787_010 Hb_000787_010 Hb_002447_160--Hb_000787_010 Hb_004021_090 Hb_004021_090 Hb_002447_160--Hb_004021_090 Hb_006907_100 Hb_006907_100 Hb_089140_010--Hb_006907_100 Hb_001898_150 Hb_001898_150 Hb_089140_010--Hb_001898_150 Hb_000826_060 Hb_000826_060 Hb_089140_010--Hb_000826_060 Hb_001711_010 Hb_001711_010 Hb_089140_010--Hb_001711_010 Hb_003776_040 Hb_003776_040 Hb_089140_010--Hb_003776_040 Hb_010913_010 Hb_010913_010 Hb_089140_010--Hb_010913_010 Hb_032264_080 Hb_032264_080 Hb_007592_020--Hb_032264_080 Hb_007592_020--Hb_025214_090 Hb_000152_510 Hb_000152_510 Hb_007592_020--Hb_000152_510 Hb_000181_410 Hb_000181_410 Hb_007592_020--Hb_000181_410 Hb_005883_070 Hb_005883_070 Hb_007592_020--Hb_005883_070 Hb_008725_060 Hb_008725_060 Hb_007592_020--Hb_008725_060 Hb_002321_040 Hb_002321_040 Hb_126648_010--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_126648_010--Hb_011609_040 Hb_005048_110 Hb_005048_110 Hb_126648_010--Hb_005048_110 Hb_013834_010 Hb_013834_010 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232277 0.0326746 0.0450236 0.0181269 0.0116331 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.020789 0 0.0165659 0

CAGE analysis