Hb_001898_150

Information

Type -
Description -
Location Contig1898: 140920-141486
Sequence    

Annotation

kegg
ID tcc:TCM_006157
description hypothetical protein
nr
ID XP_012066683.1
description PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00249 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18837: 140905-141541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_150 0.0 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
2 Hb_000883_170 0.1838984709 - - senescence-associated family protein [Populus trichocarpa]
3 Hb_000098_150 0.1841202836 - - DNA helicase hus2, putative [Ricinus communis]
4 Hb_002235_390 0.1877923884 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
5 Hb_015807_030 0.1935837781 - - PREDICTED: protein NDR1-like [Jatropha curcas]
6 Hb_001711_010 0.1945222944 - - -
7 Hb_001863_160 0.1964376459 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
8 Hb_004899_330 0.2005576635 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
9 Hb_000098_030 0.2012724556 - - MLO-like protein 4 [Gossypium arboreum]
10 Hb_001085_300 0.2047762247 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
11 Hb_001235_170 0.2055778452 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
12 Hb_001584_260 0.2069222164 - - zinc finger protein, putative [Ricinus communis]
13 Hb_171718_020 0.2069727484 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
14 Hb_004108_210 0.2074247035 - - phenazine biosynthesis protein, putative [Ricinus communis]
15 Hb_002686_150 0.2081318327 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_005144_210 0.2094234114 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004079_130 0.2095756996 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
18 Hb_005539_340 0.2154476206 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
19 Hb_006210_020 0.2163782808 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
20 Hb_001638_030 0.2170302933 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_150 Hb_001898_150 Hb_000883_170 Hb_000883_170 Hb_001898_150--Hb_000883_170 Hb_000098_150 Hb_000098_150 Hb_001898_150--Hb_000098_150 Hb_002235_390 Hb_002235_390 Hb_001898_150--Hb_002235_390 Hb_015807_030 Hb_015807_030 Hb_001898_150--Hb_015807_030 Hb_001711_010 Hb_001711_010 Hb_001898_150--Hb_001711_010 Hb_001863_160 Hb_001863_160 Hb_001898_150--Hb_001863_160 Hb_005144_210 Hb_005144_210 Hb_000883_170--Hb_005144_210 Hb_001369_470 Hb_001369_470 Hb_000883_170--Hb_001369_470 Hb_000098_030 Hb_000098_030 Hb_000883_170--Hb_000098_030 Hb_000883_170--Hb_000098_150 Hb_000883_170--Hb_001863_160 Hb_003050_260 Hb_003050_260 Hb_000883_170--Hb_003050_260 Hb_004108_210 Hb_004108_210 Hb_000098_150--Hb_004108_210 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_000098_150--Hb_001221_580 Hb_004712_190 Hb_004712_190 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_000009_520 Hb_000009_520 Hb_002235_390--Hb_000009_520 Hb_000913_030 Hb_000913_030 Hb_002235_390--Hb_000913_030 Hb_001633_090 Hb_001633_090 Hb_002235_390--Hb_001633_090 Hb_000742_010 Hb_000742_010 Hb_002235_390--Hb_000742_010 Hb_002203_030 Hb_002203_030 Hb_002235_390--Hb_002203_030 Hb_000330_060 Hb_000330_060 Hb_002235_390--Hb_000330_060 Hb_000035_050 Hb_000035_050 Hb_015807_030--Hb_000035_050 Hb_004117_170 Hb_004117_170 Hb_015807_030--Hb_004117_170 Hb_001376_010 Hb_001376_010 Hb_015807_030--Hb_001376_010 Hb_002450_030 Hb_002450_030 Hb_015807_030--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_015807_030--Hb_000042_330 Hb_000046_310 Hb_000046_310 Hb_015807_030--Hb_000046_310 Hb_000011_050 Hb_000011_050 Hb_001711_010--Hb_000011_050 Hb_004899_330 Hb_004899_330 Hb_001711_010--Hb_004899_330 Hb_011915_040 Hb_011915_040 Hb_001711_010--Hb_011915_040 Hb_171718_020 Hb_171718_020 Hb_001711_010--Hb_171718_020 Hb_003305_030 Hb_003305_030 Hb_001711_010--Hb_003305_030 Hb_001863_160--Hb_014231_020 Hb_001863_160--Hb_005144_210 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5809 18.885 27.6812 17.8901 2.22676 1.03805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6263 7.08628 3.74549 15.2585 1.49086

CAGE analysis