Hb_001711_010

Information

Type -
Description -
Location Contig1711: 5521-7042
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_010 0.0 - - -
2 Hb_000011_050 0.1775246709 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
3 Hb_004899_330 0.1880629056 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
4 Hb_001898_150 0.1945222944 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
5 Hb_011915_040 0.1982847702 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
6 Hb_171718_020 0.1994368019 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
7 Hb_003305_030 0.1994377314 - - -
8 Hb_001085_300 0.2015718826 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_174829_020 0.2028826998 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
10 Hb_000291_030 0.2063063094 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
11 Hb_005883_070 0.208191585 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
12 Hb_001235_170 0.2093270242 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
13 Hb_000062_590 0.2099860529 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_001638_030 0.2118274896 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
15 Hb_005488_120 0.2136147794 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
16 Hb_090782_010 0.213751006 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_002685_200 0.2170322069 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
18 Hb_075230_010 0.2174764614 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
19 Hb_156635_020 0.217931214 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
20 Hb_005000_140 0.2185643537 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001711_010 Hb_001711_010 Hb_000011_050 Hb_000011_050 Hb_001711_010--Hb_000011_050 Hb_004899_330 Hb_004899_330 Hb_001711_010--Hb_004899_330 Hb_001898_150 Hb_001898_150 Hb_001711_010--Hb_001898_150 Hb_011915_040 Hb_011915_040 Hb_001711_010--Hb_011915_040 Hb_171718_020 Hb_171718_020 Hb_001711_010--Hb_171718_020 Hb_003305_030 Hb_003305_030 Hb_001711_010--Hb_003305_030 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000363_350 Hb_000363_350 Hb_000011_050--Hb_000363_350 Hb_000979_060 Hb_000979_060 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480 Hb_000062_590 Hb_000062_590 Hb_004899_330--Hb_000062_590 Hb_001638_030 Hb_001638_030 Hb_004899_330--Hb_001638_030 Hb_004899_330--Hb_174829_020 Hb_001484_020 Hb_001484_020 Hb_004899_330--Hb_001484_020 Hb_002685_200 Hb_002685_200 Hb_004899_330--Hb_002685_200 Hb_001235_170 Hb_001235_170 Hb_004899_330--Hb_001235_170 Hb_000883_170 Hb_000883_170 Hb_001898_150--Hb_000883_170 Hb_000098_150 Hb_000098_150 Hb_001898_150--Hb_000098_150 Hb_002235_390 Hb_002235_390 Hb_001898_150--Hb_002235_390 Hb_015807_030 Hb_015807_030 Hb_001898_150--Hb_015807_030 Hb_001863_160 Hb_001863_160 Hb_001898_150--Hb_001863_160 Hb_000009_220 Hb_000009_220 Hb_011915_040--Hb_000009_220 Hb_156635_020 Hb_156635_020 Hb_011915_040--Hb_156635_020 Hb_000048_080 Hb_000048_080 Hb_011915_040--Hb_000048_080 Hb_000086_430 Hb_000086_430 Hb_011915_040--Hb_000086_430 Hb_004943_030 Hb_004943_030 Hb_011915_040--Hb_004943_030 Hb_003605_050 Hb_003605_050 Hb_011915_040--Hb_003605_050 Hb_171718_020--Hb_000363_350 Hb_001307_190 Hb_001307_190 Hb_171718_020--Hb_001307_190 Hb_171718_020--Hb_000011_050 Hb_014231_020 Hb_014231_020 Hb_171718_020--Hb_014231_020 Hb_000000_340 Hb_000000_340 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310 Hb_002250_050 Hb_002250_050 Hb_003305_030--Hb_002250_050 Hb_041895_040 Hb_041895_040 Hb_003305_030--Hb_041895_040 Hb_000692_210 Hb_000692_210 Hb_003305_030--Hb_000692_210 Hb_000438_090 Hb_000438_090 Hb_003305_030--Hb_000438_090 Hb_003305_030--Hb_171718_020 Hb_164945_010 Hb_164945_010 Hb_003305_030--Hb_164945_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238462 0.486884 0.528095 0.217183 0.0390951 0.0551583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0891401 0.14023 0.0649421 0.154717 0

CAGE analysis