Hb_000913_030

Information

Type -
Description -
Location Contig913: 39631-42233
Sequence    

Annotation

kegg
ID rcu:RCOM_1134580
description nuclease, putative
nr
ID XP_002517715.1
description nuclease, putative [Ricinus communis]
swissprot
ID Q8BX32
description Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1
trembl
ID B9RVE6
description Structure-specific endonuclease subunit SLX1 homolog OS=Ricinus communis GN=RCOM_1134580 PE=3 SV=1
Gene Ontology
ID GO:0033557
description structure-specific endonuclease subunit slx1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62167: 39624-42185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000913_030 0.0 - - nuclease, putative [Ricinus communis]
2 Hb_001053_190 0.0971697596 - - ADP,ATP carrier protein, putative [Ricinus communis]
3 Hb_002675_250 0.1001300142 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_000742_010 0.1027511999 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000229_050 0.107961495 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
6 Hb_000579_080 0.1090240432 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
7 Hb_005784_070 0.11057295 - - PREDICTED: protein TONSOKU isoform X2 [Jatropha curcas]
8 Hb_012438_030 0.1133071354 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_002684_020 0.1143154074 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
10 Hb_002006_150 0.1162760651 - - copine, putative [Ricinus communis]
11 Hb_000330_060 0.1170989189 - - PREDICTED: adenosine kinase [Jatropha curcas]
12 Hb_005601_020 0.1173374903 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
13 Hb_000739_240 0.1179850434 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_003363_070 0.1183883712 - - -
15 Hb_000101_390 0.1187527636 - - PREDICTED: mucin-5B [Jatropha curcas]
16 Hb_000207_300 0.1192078816 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
17 Hb_006824_010 0.1204402531 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
18 Hb_000076_210 0.1204699322 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
19 Hb_002686_080 0.122262368 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
20 Hb_008206_080 0.1223401513 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000913_030 Hb_000913_030 Hb_001053_190 Hb_001053_190 Hb_000913_030--Hb_001053_190 Hb_002675_250 Hb_002675_250 Hb_000913_030--Hb_002675_250 Hb_000742_010 Hb_000742_010 Hb_000913_030--Hb_000742_010 Hb_000229_050 Hb_000229_050 Hb_000913_030--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_000913_030--Hb_000579_080 Hb_005784_070 Hb_005784_070 Hb_000913_030--Hb_005784_070 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010 Hb_000529_180 Hb_000529_180 Hb_002675_250--Hb_000529_180 Hb_010863_050 Hb_010863_050 Hb_002675_250--Hb_010863_050 Hb_002684_020 Hb_002684_020 Hb_002675_250--Hb_002684_020 Hb_002006_150 Hb_002006_150 Hb_002675_250--Hb_002006_150 Hb_004324_360 Hb_004324_360 Hb_002675_250--Hb_004324_360 Hb_001488_020 Hb_001488_020 Hb_002675_250--Hb_001488_020 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_001633_090 Hb_001633_090 Hb_000742_010--Hb_001633_090 Hb_006824_010 Hb_006824_010 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_008206_080 Hb_008206_080 Hb_000229_050--Hb_008206_080 Hb_000229_050--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_000229_050--Hb_012633_050 Hb_011716_010 Hb_011716_010 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_000579_080--Hb_012633_050 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020 Hb_004032_160 Hb_004032_160 Hb_005784_070--Hb_004032_160 Hb_005784_070--Hb_001053_190 Hb_006120_040 Hb_006120_040 Hb_005784_070--Hb_006120_040 Hb_005784_070--Hb_016448_010 Hb_004712_190 Hb_004712_190 Hb_005784_070--Hb_004712_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03438 4.55648 12.4102 5.86475 2.19612 2.39835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12569 2.63334 3.8503 7.09399 7.71446

CAGE analysis