Hb_005946_120

Information

Type -
Description -
Location Contig5946: 55023-59242
Sequence    

Annotation

kegg
ID rcu:RCOM_0732470
description peptidase, putative (EC:3.4.21.25)
nr
ID XP_002520491.1
description peptidase, putative [Ricinus communis]
swissprot
ID F4K2K3
description ARF guanine-nucleotide exchange factor GNL2 OS=Arabidopsis thaliana GN=GNL2 PE=2 SV=1
trembl
ID B9S3C2
description Peptidase, putative OS=Ricinus communis GN=RCOM_0732470 PE=4 SV=1
Gene Ontology
ID GO:0090406
description arf guanine-nucleotide exchange factor gnl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_120 0.0 - - peptidase, putative [Ricinus communis]
2 Hb_004945_020 0.2262755348 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
3 Hb_000112_100 0.2320256213 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_001214_150 0.2807735274 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
5 Hb_020178_010 0.2894132261 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
6 Hb_000031_330 0.2903223628 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
7 Hb_000953_080 0.2963663044 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
8 Hb_034904_010 0.3134069761 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
9 Hb_160246_010 0.3170346157 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_002631_220 0.3255306266 - - Patellin-4, putative [Ricinus communis]
11 Hb_002235_410 0.3276469642 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
12 Hb_001205_190 0.3277124994 - - somatic embryogenesis receptor kinase, putative [Ricinus communis]
13 Hb_000007_430 0.3300902765 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
14 Hb_002918_130 0.3332630086 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
15 Hb_000317_160 0.3354830114 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
16 Hb_027445_040 0.3393905893 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
17 Hb_005675_060 0.3404324213 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
18 Hb_003938_210 0.3408123164 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_000984_260 0.3414289118 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
20 Hb_001907_130 0.3419565206 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005946_120 Hb_005946_120 Hb_004945_020 Hb_004945_020 Hb_005946_120--Hb_004945_020 Hb_000112_100 Hb_000112_100 Hb_005946_120--Hb_000112_100 Hb_001214_150 Hb_001214_150 Hb_005946_120--Hb_001214_150 Hb_020178_010 Hb_020178_010 Hb_005946_120--Hb_020178_010 Hb_000031_330 Hb_000031_330 Hb_005946_120--Hb_000031_330 Hb_000953_080 Hb_000953_080 Hb_005946_120--Hb_000953_080 Hb_004945_020--Hb_001214_150 Hb_002631_220 Hb_002631_220 Hb_004945_020--Hb_002631_220 Hb_005675_060 Hb_005675_060 Hb_004945_020--Hb_005675_060 Hb_131864_030 Hb_131864_030 Hb_004945_020--Hb_131864_030 Hb_126648_010 Hb_126648_010 Hb_004945_020--Hb_126648_010 Hb_000112_100--Hb_020178_010 Hb_000112_100--Hb_000953_080 Hb_002918_130 Hb_002918_130 Hb_000112_100--Hb_002918_130 Hb_000112_100--Hb_000031_330 Hb_000007_430 Hb_000007_430 Hb_000112_100--Hb_000007_430 Hb_001214_150--Hb_002631_220 Hb_101733_040 Hb_101733_040 Hb_001214_150--Hb_101733_040 Hb_171718_020 Hb_171718_020 Hb_001214_150--Hb_171718_020 Hb_025214_090 Hb_025214_090 Hb_001214_150--Hb_025214_090 Hb_001832_050 Hb_001832_050 Hb_020178_010--Hb_001832_050 Hb_020178_010--Hb_002918_130 Hb_000836_230 Hb_000836_230 Hb_020178_010--Hb_000836_230 Hb_007849_010 Hb_007849_010 Hb_020178_010--Hb_007849_010 Hb_009775_040 Hb_009775_040 Hb_020178_010--Hb_009775_040 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_001195_210 Hb_001195_210 Hb_000031_330--Hb_001195_210 Hb_000031_330--Hb_000953_080 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_000116_200 Hb_000116_200 Hb_000031_330--Hb_000116_200 Hb_001456_050 Hb_001456_050 Hb_000953_080--Hb_001456_050 Hb_055147_020 Hb_055147_020 Hb_000953_080--Hb_055147_020 Hb_010598_010 Hb_010598_010 Hb_000953_080--Hb_010598_010 Hb_000953_080--Hb_001195_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00449728 0.0136458 0.00956783 0.00455889 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00812118 0 0.00964789 0

CAGE analysis