Hb_020178_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig20178: 8435-9136
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13030g
description POPTRDRAFT_551881; hypothetical protein
nr
ID XP_012071707.1
description PREDICTED: myb-related protein A-like [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067KQI3
description MYB family protein OS=Jatropha curcas GN=JCGZ_04322 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020178_010 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
2 Hb_000112_100 0.139821847 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_001832_050 0.2243411425 - - PREDICTED: cytokinin dehydrogenase 3 [Jatropha curcas]
4 Hb_002918_130 0.2267629797 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
5 Hb_000836_230 0.2428128219 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
6 Hb_007849_010 0.2487317163 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
7 Hb_009775_040 0.2556584701 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
8 Hb_000556_180 0.2561156284 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
9 Hb_000421_270 0.2568745191 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
10 Hb_000359_320 0.2653552183 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
11 Hb_000953_080 0.2657201048 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
12 Hb_002025_350 0.267609487 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
13 Hb_001348_210 0.2687701089 - - defensin protein precursor [Capsicum annuum]
14 Hb_008695_130 0.2705934802 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000086_720 0.2711406074 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_000007_430 0.2717384147 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
17 Hb_002027_310 0.2760263552 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000116_590 0.2765297349 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
19 Hb_001391_120 0.2801984964 - - Acetyl esterase, putative [Ricinus communis]
20 Hb_000227_370 0.2863263867 - - sugar transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_020178_010 Hb_020178_010 Hb_000112_100 Hb_000112_100 Hb_020178_010--Hb_000112_100 Hb_001832_050 Hb_001832_050 Hb_020178_010--Hb_001832_050 Hb_002918_130 Hb_002918_130 Hb_020178_010--Hb_002918_130 Hb_000836_230 Hb_000836_230 Hb_020178_010--Hb_000836_230 Hb_007849_010 Hb_007849_010 Hb_020178_010--Hb_007849_010 Hb_009775_040 Hb_009775_040 Hb_020178_010--Hb_009775_040 Hb_000953_080 Hb_000953_080 Hb_000112_100--Hb_000953_080 Hb_000112_100--Hb_002918_130 Hb_005946_120 Hb_005946_120 Hb_000112_100--Hb_005946_120 Hb_000031_330 Hb_000031_330 Hb_000112_100--Hb_000031_330 Hb_000007_430 Hb_000007_430 Hb_000112_100--Hb_000007_430 Hb_001405_150 Hb_001405_150 Hb_001832_050--Hb_001405_150 Hb_003987_030 Hb_003987_030 Hb_001832_050--Hb_003987_030 Hb_001006_280 Hb_001006_280 Hb_001832_050--Hb_001006_280 Hb_004965_060 Hb_004965_060 Hb_001832_050--Hb_004965_060 Hb_011114_030 Hb_011114_030 Hb_001832_050--Hb_011114_030 Hb_002918_130--Hb_007849_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_007101_290 Hb_007101_290 Hb_002918_130--Hb_007101_290 Hb_007403_040 Hb_007403_040 Hb_000836_230--Hb_007403_040 Hb_000032_580 Hb_000032_580 Hb_000836_230--Hb_000032_580 Hb_031336_020 Hb_031336_020 Hb_000836_230--Hb_031336_020 Hb_007181_080 Hb_007181_080 Hb_000836_230--Hb_007181_080 Hb_001348_210 Hb_001348_210 Hb_000836_230--Hb_001348_210 Hb_003120_040 Hb_003120_040 Hb_007849_010--Hb_003120_040 Hb_007849_010--Hb_000007_430 Hb_000984_260 Hb_000984_260 Hb_007849_010--Hb_000984_260 Hb_001675_030 Hb_001675_030 Hb_007849_010--Hb_001675_030 Hb_000599_310 Hb_000599_310 Hb_007849_010--Hb_000599_310 Hb_009775_040--Hb_006503_010 Hb_006120_170 Hb_006120_170 Hb_009775_040--Hb_006120_170 Hb_143629_030 Hb_143629_030 Hb_009775_040--Hb_143629_030 Hb_000216_010 Hb_000216_010 Hb_009775_040--Hb_000216_010 Hb_000359_320 Hb_000359_320 Hb_009775_040--Hb_000359_320 Hb_004235_060 Hb_004235_060 Hb_009775_040--Hb_004235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.346586 0.504116 0.322536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.371921 0 1.00413 0

CAGE analysis