Hb_001832_050

Information

Type -
Description -
Location Contig1832: 32564-34620
Sequence    

Annotation

kegg
ID rcu:RCOM_1047010
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_012076943.1
description PREDICTED: cytokinin dehydrogenase 3 [Jatropha curcas]
swissprot
ID Q9LTS3
description Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1
trembl
ID A0A067KCA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07412 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_050 0.0 - - PREDICTED: cytokinin dehydrogenase 3 [Jatropha curcas]
2 Hb_001405_150 0.1839984929 - - PREDICTED: protein At-4/1 [Jatropha curcas]
3 Hb_003987_030 0.1905277428 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
4 Hb_001006_280 0.2108931163 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
5 Hb_020178_010 0.2243411425 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
6 Hb_004965_060 0.2243761386 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
7 Hb_011114_030 0.2250786403 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]
8 Hb_000914_130 0.2292872552 - - copper-transporting atpase p-type, putative [Ricinus communis]
9 Hb_000421_270 0.2321812196 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
10 Hb_002025_350 0.2322171266 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
11 Hb_000116_590 0.2356292539 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
12 Hb_000556_180 0.2387423882 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
13 Hb_000034_030 0.2391402766 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_008695_130 0.2391416894 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008899_030 0.240806953 - - Lipase class 3-related protein, putative [Theobroma cacao]
16 Hb_000130_080 0.2428997666 - - unnamed protein product [Vitis vinifera]
17 Hb_001024_030 0.2439206977 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
18 Hb_000261_420 0.2447531693 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
19 Hb_008759_020 0.2456085235 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
20 Hb_025526_080 0.2461221268 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]

Gene co-expression network

sample Hb_001832_050 Hb_001832_050 Hb_001405_150 Hb_001405_150 Hb_001832_050--Hb_001405_150 Hb_003987_030 Hb_003987_030 Hb_001832_050--Hb_003987_030 Hb_001006_280 Hb_001006_280 Hb_001832_050--Hb_001006_280 Hb_020178_010 Hb_020178_010 Hb_001832_050--Hb_020178_010 Hb_004965_060 Hb_004965_060 Hb_001832_050--Hb_004965_060 Hb_011114_030 Hb_011114_030 Hb_001832_050--Hb_011114_030 Hb_000034_030 Hb_000034_030 Hb_001405_150--Hb_000034_030 Hb_001405_150--Hb_001006_280 Hb_002025_350 Hb_002025_350 Hb_001405_150--Hb_002025_350 Hb_001024_030 Hb_001024_030 Hb_001405_150--Hb_001024_030 Hb_001018_080 Hb_001018_080 Hb_001405_150--Hb_001018_080 Hb_000421_270 Hb_000421_270 Hb_001405_150--Hb_000421_270 Hb_000236_050 Hb_000236_050 Hb_003987_030--Hb_000236_050 Hb_002750_010 Hb_002750_010 Hb_003987_030--Hb_002750_010 Hb_008695_130 Hb_008695_130 Hb_003987_030--Hb_008695_130 Hb_003987_030--Hb_000034_030 Hb_006711_020 Hb_006711_020 Hb_003987_030--Hb_006711_020 Hb_005237_040 Hb_005237_040 Hb_003987_030--Hb_005237_040 Hb_001006_280--Hb_000034_030 Hb_038670_010 Hb_038670_010 Hb_001006_280--Hb_038670_010 Hb_043768_010 Hb_043768_010 Hb_001006_280--Hb_043768_010 Hb_000720_210 Hb_000720_210 Hb_001006_280--Hb_000720_210 Hb_001365_050 Hb_001365_050 Hb_001006_280--Hb_001365_050 Hb_000112_100 Hb_000112_100 Hb_020178_010--Hb_000112_100 Hb_002918_130 Hb_002918_130 Hb_020178_010--Hb_002918_130 Hb_000836_230 Hb_000836_230 Hb_020178_010--Hb_000836_230 Hb_007849_010 Hb_007849_010 Hb_020178_010--Hb_007849_010 Hb_009775_040 Hb_009775_040 Hb_020178_010--Hb_009775_040 Hb_004965_060--Hb_011114_030 Hb_009545_020 Hb_009545_020 Hb_004965_060--Hb_009545_020 Hb_000067_030 Hb_000067_030 Hb_004965_060--Hb_000067_030 Hb_067034_030 Hb_067034_030 Hb_004965_060--Hb_067034_030 Hb_003142_090 Hb_003142_090 Hb_004965_060--Hb_003142_090 Hb_003120_040 Hb_003120_040 Hb_004965_060--Hb_003120_040 Hb_000762_070 Hb_000762_070 Hb_011114_030--Hb_000762_070 Hb_011114_030--Hb_003987_030 Hb_001408_050 Hb_001408_050 Hb_011114_030--Hb_001408_050 Hb_001135_290 Hb_001135_290 Hb_011114_030--Hb_001135_290 Hb_003576_050 Hb_003576_050 Hb_011114_030--Hb_003576_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213008 0.157958 0.0782259 0.0162649 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116508 0 0.407825 0.0605269

CAGE analysis