Hb_004965_060

Information

Type -
Description -
Location Contig4965: 99462-103711
Sequence    

Annotation

kegg
ID tcc:TCM_007489
description WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
nr
ID XP_012085943.1
description PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
swissprot
ID O22212
description U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1
trembl
ID A0A061E961
description WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related OS=Theobroma cacao GN=TCM_007489 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004965_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
2 Hb_011114_030 0.151459682 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]
3 Hb_009545_020 0.1958547023 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
4 Hb_000067_030 0.1969276714 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
5 Hb_067034_030 0.1994019472 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_003142_090 0.2000358691 - - Kinase, putative isoform 2 [Theobroma cacao]
7 Hb_003120_040 0.2182552233 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
8 Hb_031527_060 0.2186164559 - - glutamate decarboxylase, putative [Ricinus communis]
9 Hb_001252_040 0.2204780289 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
10 Hb_001832_050 0.2243761386 - - PREDICTED: cytokinin dehydrogenase 3 [Jatropha curcas]
11 Hb_006594_060 0.2243792914 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
12 Hb_001248_030 0.2299529333 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_007919_040 0.2300913626 - - PREDICTED: protein LYK5 [Jatropha curcas]
14 Hb_003106_210 0.2304269024 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
15 Hb_006501_170 0.2311183885 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
16 Hb_003576_050 0.2357188595 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
17 Hb_002030_170 0.2363083552 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
18 Hb_000521_300 0.2367354082 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000086_370 0.2367668922 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
20 Hb_006316_030 0.239441416 - - aldehyde oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004965_060 Hb_004965_060 Hb_011114_030 Hb_011114_030 Hb_004965_060--Hb_011114_030 Hb_009545_020 Hb_009545_020 Hb_004965_060--Hb_009545_020 Hb_000067_030 Hb_000067_030 Hb_004965_060--Hb_000067_030 Hb_067034_030 Hb_067034_030 Hb_004965_060--Hb_067034_030 Hb_003142_090 Hb_003142_090 Hb_004965_060--Hb_003142_090 Hb_003120_040 Hb_003120_040 Hb_004965_060--Hb_003120_040 Hb_000762_070 Hb_000762_070 Hb_011114_030--Hb_000762_070 Hb_003987_030 Hb_003987_030 Hb_011114_030--Hb_003987_030 Hb_001408_050 Hb_001408_050 Hb_011114_030--Hb_001408_050 Hb_001135_290 Hb_001135_290 Hb_011114_030--Hb_001135_290 Hb_003576_050 Hb_003576_050 Hb_011114_030--Hb_003576_050 Hb_031527_060 Hb_031527_060 Hb_009545_020--Hb_031527_060 Hb_009736_010 Hb_009736_010 Hb_009545_020--Hb_009736_010 Hb_009545_020--Hb_003120_040 Hb_124315_030 Hb_124315_030 Hb_009545_020--Hb_124315_030 Hb_000853_060 Hb_000853_060 Hb_009545_020--Hb_000853_060 Hb_003106_210 Hb_003106_210 Hb_000067_030--Hb_003106_210 Hb_000067_030--Hb_003142_090 Hb_001365_050 Hb_001365_050 Hb_000067_030--Hb_001365_050 Hb_006501_170 Hb_006501_170 Hb_000067_030--Hb_006501_170 Hb_006718_040 Hb_006718_040 Hb_000067_030--Hb_006718_040 Hb_001140_320 Hb_001140_320 Hb_000067_030--Hb_001140_320 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_000679_240 Hb_000679_240 Hb_067034_030--Hb_000679_240 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_000521_300 Hb_000521_300 Hb_067034_030--Hb_000521_300 Hb_003371_140 Hb_003371_140 Hb_003142_090--Hb_003371_140 Hb_003142_090--Hb_006501_170 Hb_061350_010 Hb_061350_010 Hb_003142_090--Hb_061350_010 Hb_002518_270 Hb_002518_270 Hb_003142_090--Hb_002518_270 Hb_000126_040 Hb_000126_040 Hb_003142_090--Hb_000126_040 Hb_003120_040--Hb_000853_060 Hb_003120_040--Hb_124315_030 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_006573_300 Hb_006573_300 Hb_003120_040--Hb_006573_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0389087 0.810132 0.120194 0.154947 0.0195755 0.0101114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.280515 0.0354173 0.91555 0.236798

CAGE analysis