Hb_143629_030

Information

Type -
Description -
Location Contig143629: 11551-12582
Sequence    

Annotation

kegg
ID rcu:RCOM_1437230
description hypothetical protein
nr
ID KDP23310.1
description hypothetical protein JCGZ_23143 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23143 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11479: 9103-10927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_030 0.0 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
2 Hb_000216_010 0.16289943 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
3 Hb_002301_200 0.1898914455 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
4 Hb_006503_010 0.1909143523 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_009775_040 0.1949923744 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
6 Hb_002211_040 0.2019532663 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
7 Hb_002401_010 0.2321145125 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_018043_010 0.2589307394 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
9 Hb_018563_020 0.2599158666 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
10 Hb_001268_060 0.2676253669 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001922_100 0.2723298106 - - S-type anion channel SLAH2 [Triticum urartu]
12 Hb_000111_300 0.2742462844 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
13 Hb_000322_120 0.2753394428 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
14 Hb_065500_040 0.2790472554 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008078_020 0.2839815555 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
16 Hb_000975_330 0.2845545658 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
17 Hb_006120_170 0.2849886005 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
18 Hb_000275_070 0.287960423 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
19 Hb_009083_010 0.2888862117 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
20 Hb_001470_070 0.2915141155 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_143629_030 Hb_143629_030 Hb_000216_010 Hb_000216_010 Hb_143629_030--Hb_000216_010 Hb_002301_200 Hb_002301_200 Hb_143629_030--Hb_002301_200 Hb_006503_010 Hb_006503_010 Hb_143629_030--Hb_006503_010 Hb_009775_040 Hb_009775_040 Hb_143629_030--Hb_009775_040 Hb_002211_040 Hb_002211_040 Hb_143629_030--Hb_002211_040 Hb_002401_010 Hb_002401_010 Hb_143629_030--Hb_002401_010 Hb_000216_010--Hb_006503_010 Hb_000216_010--Hb_009775_040 Hb_002571_040 Hb_002571_040 Hb_000216_010--Hb_002571_040 Hb_139569_010 Hb_139569_010 Hb_000216_010--Hb_139569_010 Hb_001470_070 Hb_001470_070 Hb_000216_010--Hb_001470_070 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_000111_300 Hb_000111_300 Hb_002301_200--Hb_000111_300 Hb_000574_120 Hb_000574_120 Hb_002301_200--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_002301_200--Hb_000975_330 Hb_065500_040 Hb_065500_040 Hb_002301_200--Hb_065500_040 Hb_006503_010--Hb_009775_040 Hb_006503_010--Hb_001470_070 Hb_002918_130 Hb_002918_130 Hb_006503_010--Hb_002918_130 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200 Hb_006120_170 Hb_006120_170 Hb_009775_040--Hb_006120_170 Hb_000359_320 Hb_000359_320 Hb_009775_040--Hb_000359_320 Hb_004235_060 Hb_004235_060 Hb_009775_040--Hb_004235_060 Hb_002211_040--Hb_002401_010 Hb_002211_040--Hb_002301_200 Hb_002211_040--Hb_000111_300 Hb_000275_070 Hb_000275_070 Hb_002211_040--Hb_000275_070 Hb_005725_190 Hb_005725_190 Hb_002211_040--Hb_005725_190 Hb_002401_010--Hb_002301_200 Hb_002401_010--Hb_005725_190 Hb_002401_010--Hb_000111_300 Hb_001902_150 Hb_001902_150 Hb_002401_010--Hb_001902_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.21309 0.0496246 0.0363877 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0766603 0 0.0308056 0

CAGE analysis