Hb_002301_200

Information

Type transcription factor
Description TF Family: ERF
Location Contig2301: 209865-210359
Sequence    

Annotation

kegg
ID rcu:RCOM_1673780
description Ethylene-responsive transcription factor, putative
nr
ID XP_012091650.1
description PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
swissprot
ID Q94ID6
description Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1
trembl
ID A0A067JE07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21469 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_200 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
2 Hb_002284_020 0.1831144915 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
3 Hb_000111_300 0.1840273846 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
4 Hb_143629_030 0.1898914455 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
5 Hb_000574_120 0.1929192708 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000975_330 0.1947743598 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
7 Hb_065500_040 0.1953938198 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000322_120 0.1997012443 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
9 Hb_000275_070 0.2052628779 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
10 Hb_005725_190 0.2072168674 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
11 Hb_002272_140 0.2078056532 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
12 Hb_000297_100 0.2079387765 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
13 Hb_000316_150 0.2126687171 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_005882_020 0.2128458154 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_005048_050 0.2136272307 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
16 Hb_002401_010 0.2185120211 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
17 Hb_002211_040 0.2185464706 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
18 Hb_000252_080 0.2201083371 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
19 Hb_004324_290 0.2284574171 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
20 Hb_000307_110 0.2294130972 - - hypothetical protein JCGZ_08160 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_200 Hb_002301_200 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_000111_300 Hb_000111_300 Hb_002301_200--Hb_000111_300 Hb_143629_030 Hb_143629_030 Hb_002301_200--Hb_143629_030 Hb_000574_120 Hb_000574_120 Hb_002301_200--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_002301_200--Hb_000975_330 Hb_065500_040 Hb_065500_040 Hb_002301_200--Hb_065500_040 Hb_002272_140 Hb_002272_140 Hb_002284_020--Hb_002272_140 Hb_000473_080 Hb_000473_080 Hb_002284_020--Hb_000473_080 Hb_000322_120 Hb_000322_120 Hb_002284_020--Hb_000322_120 Hb_174380_010 Hb_174380_010 Hb_002284_020--Hb_174380_010 Hb_000003_420 Hb_000003_420 Hb_002284_020--Hb_000003_420 Hb_021596_070 Hb_021596_070 Hb_002284_020--Hb_021596_070 Hb_000417_290 Hb_000417_290 Hb_000111_300--Hb_000417_290 Hb_001863_100 Hb_001863_100 Hb_000111_300--Hb_001863_100 Hb_038758_010 Hb_038758_010 Hb_000111_300--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000111_300--Hb_002217_440 Hb_008616_060 Hb_008616_060 Hb_000111_300--Hb_008616_060 Hb_000216_010 Hb_000216_010 Hb_143629_030--Hb_000216_010 Hb_006503_010 Hb_006503_010 Hb_143629_030--Hb_006503_010 Hb_009775_040 Hb_009775_040 Hb_143629_030--Hb_009775_040 Hb_002211_040 Hb_002211_040 Hb_143629_030--Hb_002211_040 Hb_002401_010 Hb_002401_010 Hb_143629_030--Hb_002401_010 Hb_004324_290 Hb_004324_290 Hb_000574_120--Hb_004324_290 Hb_000316_150 Hb_000316_150 Hb_000574_120--Hb_000316_150 Hb_000072_330 Hb_000072_330 Hb_000574_120--Hb_000072_330 Hb_004787_100 Hb_004787_100 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190 Hb_000975_330--Hb_065500_040 Hb_000975_330--Hb_000072_330 Hb_000975_330--Hb_004324_290 Hb_005048_050 Hb_005048_050 Hb_000975_330--Hb_005048_050 Hb_000975_330--Hb_000574_120 Hb_000009_310 Hb_000009_310 Hb_000975_330--Hb_000009_310 Hb_007218_140 Hb_007218_140 Hb_065500_040--Hb_007218_140 Hb_065500_040--Hb_000072_330 Hb_065500_040--Hb_005048_050 Hb_065500_040--Hb_000009_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116508 125.621 18.8393 8.61927 0 0.15698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.955175 21.8683 3.08084 17.8871 2.59935

CAGE analysis