Hb_000975_330

Information

Type transcription factor
Description TF Family: C2H2
Location Contig975: 302067-302567
Sequence    

Annotation

kegg
ID rcu:RCOM_0390960
description nucleic acid binding protein, putative
nr
ID XP_012064980.1
description PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
swissprot
ID Q42410
description Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2 SV=1
trembl
ID A0A067L6W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05663 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64031: 301930-302642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_330 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
2 Hb_065500_040 0.1205502968 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000072_330 0.1659857125 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004324_290 0.1742195137 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
5 Hb_005048_050 0.1812911377 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
6 Hb_000574_120 0.1814503057 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_310 0.1831543573 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_007218_140 0.1929597262 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
9 Hb_001472_130 0.1942930111 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
10 Hb_002301_200 0.1947743598 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
11 Hb_000316_150 0.2028628014 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_018563_020 0.2206700481 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
13 Hb_006538_030 0.2213692519 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
14 Hb_000086_610 0.225390582 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
15 Hb_002110_240 0.2323864847 - - clathrin assembly protein, putative [Ricinus communis]
16 Hb_013057_030 0.2328101408 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000103_400 0.2335306247 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
18 Hb_000275_070 0.2340705372 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
19 Hb_004787_100 0.2364268435 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
20 Hb_156850_080 0.2404213948 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_330 Hb_000975_330 Hb_065500_040 Hb_065500_040 Hb_000975_330--Hb_065500_040 Hb_000072_330 Hb_000072_330 Hb_000975_330--Hb_000072_330 Hb_004324_290 Hb_004324_290 Hb_000975_330--Hb_004324_290 Hb_005048_050 Hb_005048_050 Hb_000975_330--Hb_005048_050 Hb_000574_120 Hb_000574_120 Hb_000975_330--Hb_000574_120 Hb_000009_310 Hb_000009_310 Hb_000975_330--Hb_000009_310 Hb_007218_140 Hb_007218_140 Hb_065500_040--Hb_007218_140 Hb_065500_040--Hb_000072_330 Hb_002301_200 Hb_002301_200 Hb_065500_040--Hb_002301_200 Hb_065500_040--Hb_005048_050 Hb_065500_040--Hb_000009_310 Hb_000072_330--Hb_007218_140 Hb_000072_330--Hb_000574_120 Hb_000072_330--Hb_004324_290 Hb_015978_030 Hb_015978_030 Hb_000072_330--Hb_015978_030 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_001113_030 Hb_001113_030 Hb_005048_050--Hb_001113_030 Hb_000111_300 Hb_000111_300 Hb_005048_050--Hb_000111_300 Hb_000672_150 Hb_000672_150 Hb_005048_050--Hb_000672_150 Hb_005048_050--Hb_002301_200 Hb_000574_120--Hb_000316_150 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190 Hb_004460_040 Hb_004460_040 Hb_000009_310--Hb_004460_040 Hb_000086_610 Hb_000086_610 Hb_000009_310--Hb_000086_610 Hb_000009_310--Hb_004787_100 Hb_006538_030 Hb_006538_030 Hb_000009_310--Hb_006538_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31435 102.489 15.2166 9.98617 0.280387 0.157336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01981 13.2419 11.5774 9.82828 0

CAGE analysis