Hb_065500_040

Information

Type -
Description -
Location Contig65500: 41492-42895
Sequence    

Annotation

kegg
ID rcu:RCOM_1593310
description hypothetical protein
nr
ID XP_002510323.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7N0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52656: 41358-42626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065500_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000975_330 0.1205502968 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
3 Hb_007218_140 0.1792564059 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
4 Hb_000072_330 0.1921154739 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002301_200 0.1953938198 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
6 Hb_005048_050 0.2025443656 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
7 Hb_000009_310 0.2065132024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_004324_290 0.2088563115 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
9 Hb_006043_020 0.2111779921 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
10 Hb_000574_120 0.2130180187 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001472_130 0.2146524427 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
12 Hb_000086_610 0.2180470546 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
13 Hb_009683_050 0.2210784568 - - wall-associated kinase, putative [Ricinus communis]
14 Hb_006538_030 0.2215035585 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
15 Hb_000275_070 0.2215206933 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
16 Hb_000316_150 0.224804983 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_000322_120 0.236730711 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
18 Hb_018563_020 0.2383493387 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
19 Hb_000345_500 0.2416230581 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
20 Hb_002835_260 0.244978841 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]

Gene co-expression network

sample Hb_065500_040 Hb_065500_040 Hb_000975_330 Hb_000975_330 Hb_065500_040--Hb_000975_330 Hb_007218_140 Hb_007218_140 Hb_065500_040--Hb_007218_140 Hb_000072_330 Hb_000072_330 Hb_065500_040--Hb_000072_330 Hb_002301_200 Hb_002301_200 Hb_065500_040--Hb_002301_200 Hb_005048_050 Hb_005048_050 Hb_065500_040--Hb_005048_050 Hb_000009_310 Hb_000009_310 Hb_065500_040--Hb_000009_310 Hb_000975_330--Hb_000072_330 Hb_004324_290 Hb_004324_290 Hb_000975_330--Hb_004324_290 Hb_000975_330--Hb_005048_050 Hb_000574_120 Hb_000574_120 Hb_000975_330--Hb_000574_120 Hb_000975_330--Hb_000009_310 Hb_007218_140--Hb_000072_330 Hb_001902_150 Hb_001902_150 Hb_007218_140--Hb_001902_150 Hb_007218_140--Hb_000574_120 Hb_000275_070 Hb_000275_070 Hb_007218_140--Hb_000275_070 Hb_007218_140--Hb_000975_330 Hb_000072_330--Hb_000574_120 Hb_000072_330--Hb_004324_290 Hb_015978_030 Hb_015978_030 Hb_000072_330--Hb_015978_030 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_000111_300 Hb_000111_300 Hb_002301_200--Hb_000111_300 Hb_143629_030 Hb_143629_030 Hb_002301_200--Hb_143629_030 Hb_002301_200--Hb_000574_120 Hb_002301_200--Hb_000975_330 Hb_001113_030 Hb_001113_030 Hb_005048_050--Hb_001113_030 Hb_005048_050--Hb_000111_300 Hb_000672_150 Hb_000672_150 Hb_005048_050--Hb_000672_150 Hb_005048_050--Hb_002301_200 Hb_004460_040 Hb_004460_040 Hb_000009_310--Hb_004460_040 Hb_000086_610 Hb_000086_610 Hb_000009_310--Hb_000086_610 Hb_004787_100 Hb_004787_100 Hb_000009_310--Hb_004787_100 Hb_006538_030 Hb_006538_030 Hb_000009_310--Hb_006538_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.076965 17.3446 3.0094 1.92785 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29674 2.3619 1.01422 2.11119 0.0938654

CAGE analysis