Hb_007218_140

Information

Type -
Description -
Location Contig7218: 150761-150982
Sequence    

Annotation

kegg
ID cic:CICLE_v10013220mg
description hypothetical protein
nr
ID KDP40848.1
description hypothetical protein JCGZ_24847 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24847 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_140 0.0 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
2 Hb_000072_330 0.1410019843 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001902_150 0.1651470031 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
4 Hb_065500_040 0.1792564059 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_120 0.1876900546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000275_070 0.191347317 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
7 Hb_000975_330 0.1929597262 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
8 Hb_004324_290 0.2169289114 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
9 Hb_015978_030 0.2281730862 - - Zinc finger protein GIS2 [Medicago truncatula]
10 Hb_002063_030 0.2301382228 - - -
11 Hb_013057_030 0.2314587402 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003095_050 0.2470972743 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
13 Hb_001189_060 0.2471897505 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_005725_190 0.2483558509 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
15 Hb_005048_050 0.249420796 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
16 Hb_002301_200 0.2543668211 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
17 Hb_002835_260 0.2583645494 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
18 Hb_006096_010 0.2602405716 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000316_150 0.2610672192 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_003086_050 0.2630205463 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007218_140 Hb_007218_140 Hb_000072_330 Hb_000072_330 Hb_007218_140--Hb_000072_330 Hb_001902_150 Hb_001902_150 Hb_007218_140--Hb_001902_150 Hb_065500_040 Hb_065500_040 Hb_007218_140--Hb_065500_040 Hb_000574_120 Hb_000574_120 Hb_007218_140--Hb_000574_120 Hb_000275_070 Hb_000275_070 Hb_007218_140--Hb_000275_070 Hb_000975_330 Hb_000975_330 Hb_007218_140--Hb_000975_330 Hb_000072_330--Hb_000574_120 Hb_000072_330--Hb_000975_330 Hb_004324_290 Hb_004324_290 Hb_000072_330--Hb_004324_290 Hb_015978_030 Hb_015978_030 Hb_000072_330--Hb_015978_030 Hb_000072_330--Hb_065500_040 Hb_002063_030 Hb_002063_030 Hb_001902_150--Hb_002063_030 Hb_001902_150--Hb_000072_330 Hb_005048_050 Hb_005048_050 Hb_001902_150--Hb_005048_050 Hb_001902_150--Hb_000275_070 Hb_001189_060 Hb_001189_060 Hb_001902_150--Hb_001189_060 Hb_065500_040--Hb_000975_330 Hb_002301_200 Hb_002301_200 Hb_065500_040--Hb_002301_200 Hb_065500_040--Hb_005048_050 Hb_000009_310 Hb_000009_310 Hb_065500_040--Hb_000009_310 Hb_000574_120--Hb_004324_290 Hb_000316_150 Hb_000316_150 Hb_000574_120--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190 Hb_000275_070--Hb_005725_190 Hb_000142_010 Hb_000142_010 Hb_000275_070--Hb_000142_010 Hb_000275_070--Hb_000574_120 Hb_000275_070--Hb_013057_030 Hb_000172_300 Hb_000172_300 Hb_000275_070--Hb_000172_300 Hb_000975_330--Hb_004324_290 Hb_000975_330--Hb_005048_050 Hb_000975_330--Hb_000574_120 Hb_000975_330--Hb_000009_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.931429 67.6411 4.42143 2.22618 0.494235 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.51487 9.84664 1.76631 3.20397 0

CAGE analysis