Hb_001189_060

Information

Type -
Description -
Location Contig1189: 45662-47201
Sequence    

Annotation

kegg
ID rcu:RCOM_1341450
description Auxin-induced protein 5NG4, putative
nr
ID XP_002515123.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q9LI65
description WAT1-related protein At3g30340 OS=Arabidopsis thaliana GN=At3g30340 PE=2 SV=1
trembl
ID B9RMY4
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1341450 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g30340-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_060 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_003018_070 0.1554314983 - - SAUR family protein, partial [Theobroma cacao]
3 Hb_000186_210 0.2191337773 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_002063_030 0.2266507641 - - -
5 Hb_006907_120 0.2338616211 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
6 Hb_007105_010 0.2372169923 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
7 Hb_001902_150 0.2470052452 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
8 Hb_007218_140 0.2471897505 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
9 Hb_000275_070 0.2581248482 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
10 Hb_002719_070 0.2803702396 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_065500_040 0.29667334 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003100_010 0.3041594785 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
13 Hb_000072_330 0.3203087337 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006096_010 0.324005165 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005048_050 0.3265182275 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
16 Hb_003095_050 0.3310985156 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
17 Hb_002211_040 0.3314932993 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
18 Hb_001860_010 0.3331421548 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_001318_130 0.3363690876 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
20 Hb_180486_010 0.3369797179 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001189_060 Hb_001189_060 Hb_003018_070 Hb_003018_070 Hb_001189_060--Hb_003018_070 Hb_000186_210 Hb_000186_210 Hb_001189_060--Hb_000186_210 Hb_002063_030 Hb_002063_030 Hb_001189_060--Hb_002063_030 Hb_006907_120 Hb_006907_120 Hb_001189_060--Hb_006907_120 Hb_007105_010 Hb_007105_010 Hb_001189_060--Hb_007105_010 Hb_001902_150 Hb_001902_150 Hb_001189_060--Hb_001902_150 Hb_003018_070--Hb_000186_210 Hb_000275_070 Hb_000275_070 Hb_003018_070--Hb_000275_070 Hb_009252_120 Hb_009252_120 Hb_003018_070--Hb_009252_120 Hb_003018_070--Hb_001902_150 Hb_002211_040 Hb_002211_040 Hb_003018_070--Hb_002211_040 Hb_000186_210--Hb_006907_120 Hb_002316_040 Hb_002316_040 Hb_000186_210--Hb_002316_040 Hb_006096_010 Hb_006096_010 Hb_000186_210--Hb_006096_010 Hb_008864_070 Hb_008864_070 Hb_000186_210--Hb_008864_070 Hb_002063_030--Hb_001902_150 Hb_007218_140 Hb_007218_140 Hb_002063_030--Hb_007218_140 Hb_008695_030 Hb_008695_030 Hb_002063_030--Hb_008695_030 Hb_017647_020 Hb_017647_020 Hb_002063_030--Hb_017647_020 Hb_002063_030--Hb_000275_070 Hb_006907_120--Hb_007105_010 Hb_000077_240 Hb_000077_240 Hb_006907_120--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_006907_120--Hb_003398_030 Hb_010288_040 Hb_010288_040 Hb_006907_120--Hb_010288_040 Hb_007105_010--Hb_010288_040 Hb_005779_050 Hb_005779_050 Hb_007105_010--Hb_005779_050 Hb_007105_010--Hb_000077_240 Hb_007105_010--Hb_003398_030 Hb_001902_150--Hb_007218_140 Hb_000072_330 Hb_000072_330 Hb_001902_150--Hb_000072_330 Hb_005048_050 Hb_005048_050 Hb_001902_150--Hb_005048_050 Hb_001902_150--Hb_000275_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.160017 0 0.0168905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0457734 0.0360033 0 0.0144513 0

CAGE analysis