Hb_000072_330

Information

Type -
Description -
Location Contig72: 467508-467957
Sequence    

Annotation

kegg
ID rcu:RCOM_0095480
description hypothetical protein
nr
ID XP_002533493.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5H4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0095480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55613: 467403-467987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007218_140 0.1410019843 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
3 Hb_000574_120 0.1533959439 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000975_330 0.1659857125 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
5 Hb_004324_290 0.1667471943 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
6 Hb_015978_030 0.1700037997 - - Zinc finger protein GIS2 [Medicago truncatula]
7 Hb_065500_040 0.1921154739 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000638_210 0.1988402972 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
9 Hb_001472_130 0.2106696391 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
10 Hb_003086_050 0.2122761139 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_013057_030 0.2140288153 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003095_050 0.2141243389 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
13 Hb_005048_050 0.2153396721 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
14 Hb_003053_060 0.2155605805 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
15 Hb_003038_010 0.2178833174 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_002835_260 0.2179462669 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
17 Hb_020400_040 0.2186568116 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
18 Hb_004787_100 0.2239718876 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
19 Hb_000275_070 0.227612008 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
20 Hb_001902_150 0.2314977641 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000072_330 Hb_000072_330 Hb_007218_140 Hb_007218_140 Hb_000072_330--Hb_007218_140 Hb_000574_120 Hb_000574_120 Hb_000072_330--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_000072_330--Hb_000975_330 Hb_004324_290 Hb_004324_290 Hb_000072_330--Hb_004324_290 Hb_015978_030 Hb_015978_030 Hb_000072_330--Hb_015978_030 Hb_065500_040 Hb_065500_040 Hb_000072_330--Hb_065500_040 Hb_001902_150 Hb_001902_150 Hb_007218_140--Hb_001902_150 Hb_007218_140--Hb_065500_040 Hb_007218_140--Hb_000574_120 Hb_000275_070 Hb_000275_070 Hb_007218_140--Hb_000275_070 Hb_007218_140--Hb_000975_330 Hb_000574_120--Hb_004324_290 Hb_000316_150 Hb_000316_150 Hb_000574_120--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190 Hb_000975_330--Hb_065500_040 Hb_000975_330--Hb_004324_290 Hb_005048_050 Hb_005048_050 Hb_000975_330--Hb_005048_050 Hb_000975_330--Hb_000574_120 Hb_000009_310 Hb_000009_310 Hb_000975_330--Hb_000009_310 Hb_004324_290--Hb_000316_150 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_003053_060 Hb_003053_060 Hb_015978_030--Hb_003053_060 Hb_003086_050 Hb_003086_050 Hb_015978_030--Hb_003086_050 Hb_015978_030--Hb_004324_290 Hb_015978_030--Hb_013057_030 Hb_003095_050 Hb_003095_050 Hb_015978_030--Hb_003095_050 Hb_002301_200 Hb_002301_200 Hb_065500_040--Hb_002301_200 Hb_065500_040--Hb_005048_050 Hb_065500_040--Hb_000009_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21621 121.963 8.80178 6.58099 1.88606 0.644923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0387 15.2559 9.5933 5.24935 1.83737

CAGE analysis