Hb_003053_060

Information

Type -
Description -
Location Contig3053: 97962-98864
Sequence    

Annotation

kegg
ID rcu:RCOM_1095370
description hypothetical protein
nr
ID XP_012081485.1
description PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09585 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_060 0.0 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
2 Hb_015978_030 0.0856593477 - - Zinc finger protein GIS2 [Medicago truncatula]
3 Hb_000142_010 0.1366281251 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
4 Hb_174829_040 0.1498531451 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
5 Hb_004324_290 0.1595208123 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
6 Hb_002835_260 0.1605303715 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
7 Hb_136886_010 0.1621268845 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_047833_010 0.1622464728 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
9 Hb_000015_180 0.1623501214 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
10 Hb_002760_060 0.1647295936 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
11 Hb_002311_490 0.1668052011 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
12 Hb_003095_050 0.1669155095 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
13 Hb_116349_050 0.1692794938 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
14 Hb_000465_330 0.1767453745 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
15 Hb_158123_010 0.176970482 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_075449_030 0.1771864094 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
17 Hb_000563_460 0.1791866482 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
18 Hb_011416_020 0.1800315691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011120_020 0.1802318626 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
20 Hb_000506_140 0.1808581852 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]

Gene co-expression network

sample Hb_003053_060 Hb_003053_060 Hb_015978_030 Hb_015978_030 Hb_003053_060--Hb_015978_030 Hb_000142_010 Hb_000142_010 Hb_003053_060--Hb_000142_010 Hb_174829_040 Hb_174829_040 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010 Hb_003086_050 Hb_003086_050 Hb_015978_030--Hb_003086_050 Hb_000072_330 Hb_000072_330 Hb_015978_030--Hb_000072_330 Hb_015978_030--Hb_004324_290 Hb_013057_030 Hb_013057_030 Hb_015978_030--Hb_013057_030 Hb_003095_050 Hb_003095_050 Hb_015978_030--Hb_003095_050 Hb_000142_010--Hb_174829_040 Hb_002042_190 Hb_002042_190 Hb_000142_010--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_000142_010--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_174829_040--Hb_002042_190 Hb_174829_040--Hb_116349_050 Hb_174829_040--Hb_002311_490 Hb_000172_300 Hb_000172_300 Hb_174829_040--Hb_000172_300 Hb_000414_100 Hb_000414_100 Hb_174829_040--Hb_000414_100 Hb_000574_120 Hb_000574_120 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_000015_180 Hb_000015_180 Hb_002835_260--Hb_000015_180 Hb_002835_260--Hb_011416_020 Hb_011120_020 Hb_011120_020 Hb_002835_260--Hb_011120_020 Hb_000220_090 Hb_000220_090 Hb_002835_260--Hb_000220_090 Hb_000434_050 Hb_000434_050 Hb_002835_260--Hb_000434_050 Hb_002835_260--Hb_136886_010 Hb_000960_010 Hb_000960_010 Hb_136886_010--Hb_000960_010 Hb_127819_010 Hb_127819_010 Hb_136886_010--Hb_127819_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_136886_010--Hb_002217_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.97954 522.519 18.7367 53.919 9.10499 12.3382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3495 13.8705 14.247 5.28223 5.88815

CAGE analysis