Hb_011416_020

Information

Type -
Description -
Location Contig11416: 5090-5320
Sequence    

Annotation

kegg
ID rcu:RCOM_1314170
description hypothetical protein
nr
ID XP_002518933.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1314170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011416_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002835_260 0.1338290471 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
3 Hb_000142_010 0.1353670182 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
4 Hb_011120_020 0.1429386122 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
5 Hb_000003_430 0.1605707583 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_001956_190 0.1607454247 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_000506_130 0.1686614922 - - DGCR14-related family protein [Populus trichocarpa]
8 Hb_000506_140 0.1703695843 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
9 Hb_125884_010 0.175788232 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
10 Hb_111881_030 0.1797674861 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
11 Hb_000015_180 0.1798646982 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_003023_060 0.1798750111 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
13 Hb_003053_060 0.1800315691 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
14 Hb_002042_190 0.1861318072 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
15 Hb_052113_020 0.1891458699 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
16 Hb_000465_330 0.1898094316 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
17 Hb_047833_010 0.1899553362 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
18 Hb_174829_040 0.1909618317 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
19 Hb_004968_050 0.1932011471 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
20 Hb_001404_010 0.1944543147 - - hypothetical protein JCGZ_22818 [Jatropha curcas]

Gene co-expression network

sample Hb_011416_020 Hb_011416_020 Hb_002835_260 Hb_002835_260 Hb_011416_020--Hb_002835_260 Hb_000142_010 Hb_000142_010 Hb_011416_020--Hb_000142_010 Hb_011120_020 Hb_011120_020 Hb_011416_020--Hb_011120_020 Hb_000003_430 Hb_000003_430 Hb_011416_020--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_011416_020--Hb_001956_190 Hb_000506_130 Hb_000506_130 Hb_011416_020--Hb_000506_130 Hb_000015_180 Hb_000015_180 Hb_002835_260--Hb_000015_180 Hb_002835_260--Hb_011120_020 Hb_000220_090 Hb_000220_090 Hb_002835_260--Hb_000220_090 Hb_000434_050 Hb_000434_050 Hb_002835_260--Hb_000434_050 Hb_136886_010 Hb_136886_010 Hb_002835_260--Hb_136886_010 Hb_174829_040 Hb_174829_040 Hb_000142_010--Hb_174829_040 Hb_002042_190 Hb_002042_190 Hb_000142_010--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_000142_010--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_000142_010--Hb_002311_490 Hb_003053_060 Hb_003053_060 Hb_000142_010--Hb_003053_060 Hb_011120_020--Hb_000015_180 Hb_011120_020--Hb_000003_430 Hb_002918_150 Hb_002918_150 Hb_011120_020--Hb_002918_150 Hb_011120_020--Hb_000220_090 Hb_111881_030 Hb_111881_030 Hb_000003_430--Hb_111881_030 Hb_000003_430--Hb_001956_190 Hb_000270_770 Hb_000270_770 Hb_000003_430--Hb_000270_770 Hb_187697_010 Hb_187697_010 Hb_000003_430--Hb_187697_010 Hb_001956_190--Hb_111881_030 Hb_001956_190--Hb_000506_130 Hb_001956_190--Hb_000270_770 Hb_000336_190 Hb_000336_190 Hb_001956_190--Hb_000336_190 Hb_000003_760 Hb_000003_760 Hb_001956_190--Hb_000003_760 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7296 1288.11 54.3857 390.22 18.1811 27.4762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7665 100.384 8.615 17.4825 10.7932

CAGE analysis