Hb_000270_770

Information

Type -
Description -
Location Contig270: 634217-634735
Sequence    

Annotation

kegg
ID rcu:RCOM_1511590
description hypothetical protein
nr
ID XP_012080100.1
description PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11503 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28278: 634021-634747 , PASA_asmbl_28279: 634828-635115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_770 0.0 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
2 Hb_000003_430 0.1305163243 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_001956_190 0.1365252283 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_103788_010 0.1495519234 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_185513_010 0.1535669718 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006711_070 0.1612236168 - - hypothetical protein RCOM_1336320 [Ricinus communis]
7 Hb_003637_020 0.1620836537 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003913_030 0.166010186 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
9 Hb_000117_060 0.1739469194 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
10 Hb_111881_030 0.1771555995 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
11 Hb_002918_150 0.1799405644 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
12 Hb_011120_020 0.1804701297 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
13 Hb_138585_100 0.1822839915 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
14 Hb_006185_010 0.1849002427 - - hypothetical protein L484_013453 [Morus notabilis]
15 Hb_000220_090 0.1856975649 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
16 Hb_012107_010 0.1876257508 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
17 Hb_000336_190 0.1897732688 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
18 Hb_000258_370 0.1990106054 - - hypothetical protein [Ricinus communis]
19 Hb_000015_180 0.2003905817 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
20 Hb_004453_180 0.2016032697 - - hypothetical protein JCGZ_07188 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_770 Hb_000270_770 Hb_000003_430 Hb_000003_430 Hb_000270_770--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_000270_770--Hb_001956_190 Hb_103788_010 Hb_103788_010 Hb_000270_770--Hb_103788_010 Hb_185513_010 Hb_185513_010 Hb_000270_770--Hb_185513_010 Hb_006711_070 Hb_006711_070 Hb_000270_770--Hb_006711_070 Hb_003637_020 Hb_003637_020 Hb_000270_770--Hb_003637_020 Hb_111881_030 Hb_111881_030 Hb_000003_430--Hb_111881_030 Hb_000003_430--Hb_001956_190 Hb_011120_020 Hb_011120_020 Hb_000003_430--Hb_011120_020 Hb_187697_010 Hb_187697_010 Hb_000003_430--Hb_187697_010 Hb_011416_020 Hb_011416_020 Hb_000003_430--Hb_011416_020 Hb_001956_190--Hb_111881_030 Hb_000506_130 Hb_000506_130 Hb_001956_190--Hb_000506_130 Hb_000336_190 Hb_000336_190 Hb_001956_190--Hb_000336_190 Hb_000003_760 Hb_000003_760 Hb_001956_190--Hb_000003_760 Hb_103788_010--Hb_003637_020 Hb_003752_120 Hb_003752_120 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_103788_010--Hb_185513_010 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_012725_040 Hb_012725_040 Hb_185513_010--Hb_012725_040 Hb_185513_010--Hb_003637_020 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_000117_060 Hb_000117_060 Hb_185513_010--Hb_000117_060 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_006711_070--Hb_000117_060 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_000134_340 Hb_000134_340 Hb_006711_070--Hb_000134_340 Hb_005096_010 Hb_005096_010 Hb_006711_070--Hb_005096_010 Hb_138585_100 Hb_138585_100 Hb_006711_070--Hb_138585_100 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_003637_020--Hb_000117_060 Hb_003637_020--Hb_003752_120 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7142 135.698 12.6522 69.8886 14.084 11.2935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8851 17.9642 9.14705 9.49944 3.36673

CAGE analysis