Hb_187697_010

Information

Type -
Description -
Location Contig187697: 3831-9494
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID XP_002523474.1
description TMV resistance protein N, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBV5
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1045150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18503: 3227-3445 , PASA_asmbl_18504: 8287-8445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187697_010 0.0 - - TMV resistance protein N, putative [Ricinus communis]
2 Hb_000003_430 0.1501707702 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_000029_280 0.167575524 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
4 Hb_000506_130 0.1680232631 - - DGCR14-related family protein [Populus trichocarpa]
5 Hb_127628_010 0.1708600964 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_008725_190 0.173501503 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
7 Hb_003913_030 0.1791939015 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
8 Hb_008092_030 0.1825759722 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
9 Hb_001956_190 0.1827073766 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_012760_060 0.1877657626 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
11 Hb_000699_190 0.1909172667 - - unknown [Populus trichocarpa]
12 Hb_111881_030 0.1910140749 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
13 Hb_000668_170 0.1927677891 - - sulfate transporter, putative [Ricinus communis]
14 Hb_000336_190 0.1950727475 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
15 Hb_131957_010 0.2033042846 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_001787_070 0.2044878636 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
17 Hb_000506_140 0.2051401181 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
18 Hb_010142_040 0.2052990413 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
19 Hb_011416_020 0.2064920451 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000003_760 0.2073903463 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]

Gene co-expression network

sample Hb_187697_010 Hb_187697_010 Hb_000003_430 Hb_000003_430 Hb_187697_010--Hb_000003_430 Hb_000029_280 Hb_000029_280 Hb_187697_010--Hb_000029_280 Hb_000506_130 Hb_000506_130 Hb_187697_010--Hb_000506_130 Hb_127628_010 Hb_127628_010 Hb_187697_010--Hb_127628_010 Hb_008725_190 Hb_008725_190 Hb_187697_010--Hb_008725_190 Hb_003913_030 Hb_003913_030 Hb_187697_010--Hb_003913_030 Hb_111881_030 Hb_111881_030 Hb_000003_430--Hb_111881_030 Hb_001956_190 Hb_001956_190 Hb_000003_430--Hb_001956_190 Hb_000270_770 Hb_000270_770 Hb_000003_430--Hb_000270_770 Hb_011120_020 Hb_011120_020 Hb_000003_430--Hb_011120_020 Hb_011416_020 Hb_011416_020 Hb_000003_430--Hb_011416_020 Hb_000668_170 Hb_000668_170 Hb_000029_280--Hb_000668_170 Hb_005183_010 Hb_005183_010 Hb_000029_280--Hb_005183_010 Hb_000087_180 Hb_000087_180 Hb_000029_280--Hb_000087_180 Hb_000029_280--Hb_127628_010 Hb_107495_050 Hb_107495_050 Hb_000029_280--Hb_107495_050 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_136027_010 Hb_136027_010 Hb_127628_010--Hb_136027_010 Hb_127628_010--Hb_000506_140 Hb_016404_010 Hb_016404_010 Hb_127628_010--Hb_016404_010 Hb_121913_010 Hb_121913_010 Hb_127628_010--Hb_121913_010 Hb_000465_330 Hb_000465_330 Hb_127628_010--Hb_000465_330 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_001227_010 Hb_001227_010 Hb_008725_190--Hb_001227_010 Hb_007304_100 Hb_007304_100 Hb_008725_190--Hb_007304_100 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010 Hb_003531_040 Hb_003531_040 Hb_003913_030--Hb_003531_040 Hb_000220_090 Hb_000220_090 Hb_003913_030--Hb_000220_090 Hb_006916_200 Hb_006916_200 Hb_003913_030--Hb_006916_200 Hb_000117_060 Hb_000117_060 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003637_020 Hb_003637_020 Hb_003913_030--Hb_003637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.561257 10.5456 1.18223 5.94529 0.533978 0.894508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242586 0.190764 0.173755 0.365798 0

CAGE analysis