Hb_127628_010

Information

Type -
Description -
Location Contig127628: 3-515
Sequence    

Annotation

kegg
ID pop:POPTR_0017s01950g
description hypothetical protein
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127628_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_136027_010 0.1414988742 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_000506_140 0.1542640253 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
4 Hb_016404_010 0.1549601869 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000029_280 0.1581374748 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
6 Hb_121913_010 0.1592334106 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_000465_330 0.1619864926 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
8 Hb_000796_200 0.1655157675 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
9 Hb_183539_010 0.1674336119 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
10 Hb_000668_170 0.1692596493 - - sulfate transporter, putative [Ricinus communis]
11 Hb_187697_010 0.1708600964 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_000087_180 0.1722661594 - - conserved hypothetical protein [Ricinus communis]
13 Hb_017434_020 0.1744745456 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
14 Hb_107495_050 0.1770118314 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
15 Hb_003582_020 0.1815137168 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
16 Hb_002311_490 0.1815882447 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
17 Hb_000134_010 0.1817036144 - - -
18 Hb_010012_020 0.1843276665 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002107_080 0.1846876629 - - JHL20J20.3 [Jatropha curcas]
20 Hb_012423_020 0.1855943332 - - hypothetical protein JCGZ_20730 [Jatropha curcas]

Gene co-expression network

sample Hb_127628_010 Hb_127628_010 Hb_136027_010 Hb_136027_010 Hb_127628_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_127628_010--Hb_000506_140 Hb_016404_010 Hb_016404_010 Hb_127628_010--Hb_016404_010 Hb_000029_280 Hb_000029_280 Hb_127628_010--Hb_000029_280 Hb_121913_010 Hb_121913_010 Hb_127628_010--Hb_121913_010 Hb_000465_330 Hb_000465_330 Hb_127628_010--Hb_000465_330 Hb_003582_020 Hb_003582_020 Hb_136027_010--Hb_003582_020 Hb_136027_010--Hb_016404_010 Hb_035391_010 Hb_035391_010 Hb_136027_010--Hb_035391_010 Hb_009247_020 Hb_009247_020 Hb_136027_010--Hb_009247_020 Hb_001846_040 Hb_001846_040 Hb_136027_010--Hb_001846_040 Hb_000796_200 Hb_000796_200 Hb_136027_010--Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_000506_140--Hb_016404_010 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_016404_010--Hb_000796_200 Hb_016404_010--Hb_002311_490 Hb_016404_010--Hb_000465_330 Hb_000668_170 Hb_000668_170 Hb_000029_280--Hb_000668_170 Hb_005183_010 Hb_005183_010 Hb_000029_280--Hb_005183_010 Hb_000087_180 Hb_000087_180 Hb_000029_280--Hb_000087_180 Hb_107495_050 Hb_107495_050 Hb_000029_280--Hb_107495_050 Hb_187697_010 Hb_187697_010 Hb_000029_280--Hb_187697_010 Hb_158123_010 Hb_158123_010 Hb_121913_010--Hb_158123_010 Hb_121913_010--Hb_000465_330 Hb_121913_010--Hb_136027_010 Hb_121913_010--Hb_035391_010 Hb_114932_010 Hb_114932_010 Hb_121913_010--Hb_114932_010 Hb_121913_010--Hb_003582_020 Hb_000465_330--Hb_002311_490 Hb_000465_330--Hb_158123_010 Hb_000465_330--Hb_000796_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05862 25.7588 3.3529 8.96633 0.684215 0.740272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.461361 0

CAGE analysis