Hb_006916_200

Information

Type -
Description -
Location Contig6916: 177507-180077
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13190g
description hypothetical protein
nr
ID XP_006373375.1
description hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID U5FP93
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s13190g PE=3 SV=1
Gene Ontology
ID GO:0004674
description malectin receptor-like protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_200 0.0 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
2 Hb_003531_040 0.1383832238 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_003913_030 0.1520599293 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
4 Hb_000008_110 0.161118187 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
5 Hb_000345_500 0.1790536144 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
6 Hb_000220_090 0.1798847874 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
7 Hb_001511_190 0.1819282437 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
8 Hb_001956_190 0.1824164647 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_003224_030 0.1846398443 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
10 Hb_000853_100 0.1897629193 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
11 Hb_020967_010 0.192664026 - - -
12 Hb_011689_100 0.1959220074 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
13 Hb_002875_070 0.1966215661 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_000069_330 0.1967679077 - - protein with unknown function [Ricinus communis]
15 Hb_003077_050 0.1990681799 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
16 Hb_000336_190 0.2000550262 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
17 Hb_007379_020 0.2047323809 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
18 Hb_007007_080 0.2058382109 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012787_040 0.2090601629 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
20 Hb_002035_030 0.2105056392 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]

Gene co-expression network

sample Hb_006916_200 Hb_006916_200 Hb_003531_040 Hb_003531_040 Hb_006916_200--Hb_003531_040 Hb_003913_030 Hb_003913_030 Hb_006916_200--Hb_003913_030 Hb_000008_110 Hb_000008_110 Hb_006916_200--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_006916_200--Hb_000345_500 Hb_000220_090 Hb_000220_090 Hb_006916_200--Hb_000220_090 Hb_001511_190 Hb_001511_190 Hb_006916_200--Hb_001511_190 Hb_003531_040--Hb_003913_030 Hb_020967_010 Hb_020967_010 Hb_003531_040--Hb_020967_010 Hb_005714_100 Hb_005714_100 Hb_003531_040--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_003531_040--Hb_011689_100 Hb_002875_070 Hb_002875_070 Hb_003531_040--Hb_002875_070 Hb_003913_030--Hb_000220_090 Hb_000117_060 Hb_000117_060 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003637_020 Hb_003637_020 Hb_003913_030--Hb_003637_020 Hb_000008_110--Hb_001511_190 Hb_005545_070 Hb_005545_070 Hb_000008_110--Hb_005545_070 Hb_000417_420 Hb_000417_420 Hb_000008_110--Hb_000417_420 Hb_005663_070 Hb_005663_070 Hb_000008_110--Hb_005663_070 Hb_012107_010 Hb_012107_010 Hb_000008_110--Hb_012107_010 Hb_002053_030 Hb_002053_030 Hb_000345_500--Hb_002053_030 Hb_000776_050 Hb_000776_050 Hb_000345_500--Hb_000776_050 Hb_006043_020 Hb_006043_020 Hb_000345_500--Hb_006043_020 Hb_006538_030 Hb_006538_030 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_001863_270 Hb_001863_270 Hb_000345_500--Hb_001863_270 Hb_000015_180 Hb_000015_180 Hb_000220_090--Hb_000015_180 Hb_003038_010 Hb_003038_010 Hb_000220_090--Hb_003038_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_000220_090--Hb_102100_010 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_001511_190--Hb_000345_500 Hb_001507_030 Hb_001507_030 Hb_001511_190--Hb_001507_030 Hb_002759_260 Hb_002759_260 Hb_001511_190--Hb_002759_260 Hb_001511_190--Hb_012107_010 Hb_001511_190--Hb_002875_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.347082 2.0944 0.518139 1.06467 0.0221913 0.0665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15426 0.107899 0.385899 0.224901 0.0573737

CAGE analysis