Hb_000008_110

Information

Type -
Description -
Location Contig8: 152777-156570
Sequence    

Annotation

kegg
ID vvi:100248326
description calcium-transporting ATPase 4, endoplasmic reticulum-type-like
nr
ID XP_012468366.1
description PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
swissprot
ID P92939
description Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2
trembl
ID A0A0D2NSR5
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G252900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase endoplasmic reticulum-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58658: 153877-154543 , PASA_asmbl_58659: 154574-154890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_110 0.0 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
2 Hb_001511_190 0.128949867 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
3 Hb_005545_070 0.1577140472 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_006916_200 0.161118187 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
5 Hb_000417_420 0.1793195401 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
6 Hb_005663_070 0.1822711225 - - dehydrin protein [Manihot esculenta]
7 Hb_012107_010 0.1829899068 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
8 Hb_003077_050 0.1848458887 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
9 Hb_000345_500 0.1996818696 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
10 Hb_009233_030 0.2021916335 - - protein binding protein, putative [Ricinus communis]
11 Hb_001956_190 0.2046592374 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_000256_130 0.2054277662 - - hypothetical protein 21 [Hevea brasiliensis]
13 Hb_002053_130 0.2064296522 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
14 Hb_002110_240 0.2128423427 - - clathrin assembly protein, putative [Ricinus communis]
15 Hb_032264_090 0.2144833774 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
16 Hb_006909_060 0.2173471886 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
17 Hb_001472_130 0.2204356017 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
18 Hb_002759_260 0.2220012606 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
19 Hb_000270_770 0.2229274019 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
20 Hb_004965_050 0.2233684303 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_110 Hb_000008_110 Hb_001511_190 Hb_001511_190 Hb_000008_110--Hb_001511_190 Hb_005545_070 Hb_005545_070 Hb_000008_110--Hb_005545_070 Hb_006916_200 Hb_006916_200 Hb_000008_110--Hb_006916_200 Hb_000417_420 Hb_000417_420 Hb_000008_110--Hb_000417_420 Hb_005663_070 Hb_005663_070 Hb_000008_110--Hb_005663_070 Hb_012107_010 Hb_012107_010 Hb_000008_110--Hb_012107_010 Hb_000345_500 Hb_000345_500 Hb_001511_190--Hb_000345_500 Hb_001507_030 Hb_001507_030 Hb_001511_190--Hb_001507_030 Hb_002759_260 Hb_002759_260 Hb_001511_190--Hb_002759_260 Hb_001511_190--Hb_012107_010 Hb_002875_070 Hb_002875_070 Hb_001511_190--Hb_002875_070 Hb_002053_130 Hb_002053_130 Hb_005545_070--Hb_002053_130 Hb_003077_050 Hb_003077_050 Hb_005545_070--Hb_003077_050 Hb_005545_070--Hb_000417_420 Hb_005545_070--Hb_012107_010 Hb_000179_240 Hb_000179_240 Hb_005545_070--Hb_000179_240 Hb_003531_040 Hb_003531_040 Hb_006916_200--Hb_003531_040 Hb_003913_030 Hb_003913_030 Hb_006916_200--Hb_003913_030 Hb_006916_200--Hb_000345_500 Hb_000220_090 Hb_000220_090 Hb_006916_200--Hb_000220_090 Hb_006916_200--Hb_001511_190 Hb_000417_420--Hb_012107_010 Hb_000179_230 Hb_000179_230 Hb_000417_420--Hb_000179_230 Hb_000417_420--Hb_002053_130 Hb_001437_010 Hb_001437_010 Hb_000417_420--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000417_420--Hb_028207_040 Hb_001472_130 Hb_001472_130 Hb_000417_420--Hb_001472_130 Hb_171900_020 Hb_171900_020 Hb_005663_070--Hb_171900_020 Hb_006909_060 Hb_006909_060 Hb_005663_070--Hb_006909_060 Hb_004724_210 Hb_004724_210 Hb_005663_070--Hb_004724_210 Hb_001944_020 Hb_001944_020 Hb_005663_070--Hb_001944_020 Hb_001235_170 Hb_001235_170 Hb_005663_070--Hb_001235_170 Hb_005663_070--Hb_012107_010 Hb_012107_010--Hb_002053_130 Hb_012107_010--Hb_001944_020 Hb_002639_100 Hb_002639_100 Hb_012107_010--Hb_002639_100 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_003747_210 Hb_003747_210 Hb_012107_010--Hb_003747_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114328 1.23991 0.194739 0.520115 0.011468 0.0506672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208382 0.163982 0.376674 0.0693596 0.0466838

CAGE analysis