Hb_005545_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5545: 100973-104419
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0005515
description fom-2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48457: 103242-103444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_070 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_000008_110 0.1577140472 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
3 Hb_002053_130 0.1629000923 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
4 Hb_003077_050 0.1683826624 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
5 Hb_000417_420 0.1745411749 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
6 Hb_012107_010 0.1762708782 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
7 Hb_000179_240 0.1841298716 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
8 Hb_001511_190 0.1847806131 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
9 Hb_001944_020 0.187520244 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
10 Hb_000069_330 0.1910952993 - - protein with unknown function [Ricinus communis]
11 Hb_006909_060 0.1924251296 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
12 Hb_001472_130 0.1956049718 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
13 Hb_000345_500 0.1963410861 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
14 Hb_004965_050 0.2021415257 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
15 Hb_000179_230 0.2068944169 - - PREDICTED: myosin-17 [Jatropha curcas]
16 Hb_005496_180 0.2073430413 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
17 Hb_003605_240 0.2084717184 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
18 Hb_002639_100 0.2097959589 - - dehydrin [Hevea brasiliensis]
19 Hb_000038_040 0.2151319653 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
20 Hb_002915_070 0.2152377695 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005545_070 Hb_005545_070 Hb_000008_110 Hb_000008_110 Hb_005545_070--Hb_000008_110 Hb_002053_130 Hb_002053_130 Hb_005545_070--Hb_002053_130 Hb_003077_050 Hb_003077_050 Hb_005545_070--Hb_003077_050 Hb_000417_420 Hb_000417_420 Hb_005545_070--Hb_000417_420 Hb_012107_010 Hb_012107_010 Hb_005545_070--Hb_012107_010 Hb_000179_240 Hb_000179_240 Hb_005545_070--Hb_000179_240 Hb_001511_190 Hb_001511_190 Hb_000008_110--Hb_001511_190 Hb_006916_200 Hb_006916_200 Hb_000008_110--Hb_006916_200 Hb_000008_110--Hb_000417_420 Hb_005663_070 Hb_005663_070 Hb_000008_110--Hb_005663_070 Hb_000008_110--Hb_012107_010 Hb_002053_130--Hb_012107_010 Hb_002639_100 Hb_002639_100 Hb_002053_130--Hb_002639_100 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_001944_020 Hb_001944_020 Hb_002053_130--Hb_001944_020 Hb_002053_130--Hb_000179_240 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_000069_330 Hb_000069_330 Hb_003077_050--Hb_000069_330 Hb_004117_170 Hb_004117_170 Hb_003077_050--Hb_004117_170 Hb_000077_390 Hb_000077_390 Hb_003077_050--Hb_000077_390 Hb_002685_200 Hb_002685_200 Hb_003077_050--Hb_002685_200 Hb_001484_020 Hb_001484_020 Hb_003077_050--Hb_001484_020 Hb_000186_200 Hb_000186_200 Hb_003077_050--Hb_000186_200 Hb_000417_420--Hb_012107_010 Hb_000179_230 Hb_000179_230 Hb_000417_420--Hb_000179_230 Hb_000417_420--Hb_002053_130 Hb_001437_010 Hb_001437_010 Hb_000417_420--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000417_420--Hb_028207_040 Hb_001472_130 Hb_001472_130 Hb_000417_420--Hb_001472_130 Hb_012107_010--Hb_001944_020 Hb_012107_010--Hb_002639_100 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_003747_210 Hb_003747_210 Hb_012107_010--Hb_003747_210 Hb_000179_240--Hb_002685_200 Hb_000179_240--Hb_000186_200 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0715155 1.57629 0.368378 0.531892 0.00516928 0.255879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17528 0.325135 0.396647 0.105431 0.126427

CAGE analysis