Hb_015978_030

Information

Type -
Description -
Location Contig15978: 12719-17951
Sequence    

Annotation

kegg
ID mtr:MTR_2g030270
description Zinc finger protein GIS2
nr
ID XP_003594532.1
description Zinc finger protein GIS2 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14214: 17331-36302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_030 0.0 - - Zinc finger protein GIS2 [Medicago truncatula]
2 Hb_003053_060 0.0856593477 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
3 Hb_003086_050 0.1559029701 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_000072_330 0.1700037997 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004324_290 0.1710993283 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
6 Hb_013057_030 0.1713541255 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003095_050 0.1776687858 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
8 Hb_000142_010 0.1793070427 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
9 Hb_000015_180 0.1798042661 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
10 Hb_002835_260 0.1798385006 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
11 Hb_116349_050 0.1826583369 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
12 Hb_000574_120 0.1843509011 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002760_060 0.1881812074 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
14 Hb_003038_010 0.1899007218 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_048653_020 0.1915684776 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_011120_020 0.193357067 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
17 Hb_174829_040 0.1964268284 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
18 Hb_075449_030 0.1967838119 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
19 Hb_001922_160 0.1989039938 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
20 Hb_136886_010 0.199681658 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_015978_030 Hb_015978_030 Hb_003053_060 Hb_003053_060 Hb_015978_030--Hb_003053_060 Hb_003086_050 Hb_003086_050 Hb_015978_030--Hb_003086_050 Hb_000072_330 Hb_000072_330 Hb_015978_030--Hb_000072_330 Hb_004324_290 Hb_004324_290 Hb_015978_030--Hb_004324_290 Hb_013057_030 Hb_013057_030 Hb_015978_030--Hb_013057_030 Hb_003095_050 Hb_003095_050 Hb_015978_030--Hb_003095_050 Hb_000142_010 Hb_000142_010 Hb_003053_060--Hb_000142_010 Hb_174829_040 Hb_174829_040 Hb_003053_060--Hb_174829_040 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010 Hb_000307_110 Hb_000307_110 Hb_003086_050--Hb_000307_110 Hb_003086_050--Hb_013057_030 Hb_116349_050 Hb_116349_050 Hb_003086_050--Hb_116349_050 Hb_048653_020 Hb_048653_020 Hb_003086_050--Hb_048653_020 Hb_000103_400 Hb_000103_400 Hb_003086_050--Hb_000103_400 Hb_007218_140 Hb_007218_140 Hb_000072_330--Hb_007218_140 Hb_000574_120 Hb_000574_120 Hb_000072_330--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_000072_330--Hb_000975_330 Hb_000072_330--Hb_004324_290 Hb_065500_040 Hb_065500_040 Hb_000072_330--Hb_065500_040 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_002217_440 Hb_002217_440 Hb_013057_030--Hb_002217_440 Hb_048653_040 Hb_048653_040 Hb_013057_030--Hb_048653_040 Hb_013057_030--Hb_048653_020 Hb_000172_300 Hb_000172_300 Hb_013057_030--Hb_000172_300 Hb_013057_030--Hb_116349_050 Hb_003095_050--Hb_003053_060 Hb_003095_050--Hb_000142_010 Hb_059580_010 Hb_059580_010 Hb_003095_050--Hb_059580_010 Hb_000275_070 Hb_000275_070 Hb_003095_050--Hb_000275_070 Hb_075449_030 Hb_075449_030 Hb_003095_050--Hb_075449_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23704 147.196 4.50332 10.8214 3.48293 4.37582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47151 6.47473 5.91946 3.73995 3.08643

CAGE analysis