Hb_075449_030

Information

Type -
Description -
Location Contig75449: 8583-10823
Sequence    

Annotation

kegg
ID rcu:RCOM_0522350
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012071021.1
description PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
swissprot
ID Q8LBL1
description Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2
trembl
ID A0A067KSV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01038 PE=4 SV=1
Gene Ontology
ID GO:0016021
description two-pore potassium channel 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075449_030 0.0 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
2 Hb_116349_050 0.1382357451 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
3 Hb_002042_190 0.1383394275 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
4 Hb_000142_010 0.1493414226 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
5 Hb_174829_040 0.1661769968 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
6 Hb_052113_020 0.1756459696 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_003053_060 0.1771864094 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
8 Hb_000336_160 0.1820548521 - - ATP binding protein, putative [Ricinus communis]
9 Hb_011805_060 0.1961901271 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_009252_140 0.1962247594 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_015978_030 0.1967838119 - - Zinc finger protein GIS2 [Medicago truncatula]
12 Hb_000172_300 0.2011854806 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
13 Hb_000181_080 0.2034199072 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
14 Hb_000210_150 0.2034890788 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_000506_140 0.2044046059 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
16 Hb_000627_140 0.2053240906 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002311_490 0.2070094034 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
18 Hb_002639_090 0.2074936743 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
19 Hb_000414_100 0.207717398 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
20 Hb_116349_090 0.2078996039 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_075449_030 Hb_075449_030 Hb_116349_050 Hb_116349_050 Hb_075449_030--Hb_116349_050 Hb_002042_190 Hb_002042_190 Hb_075449_030--Hb_002042_190 Hb_000142_010 Hb_000142_010 Hb_075449_030--Hb_000142_010 Hb_174829_040 Hb_174829_040 Hb_075449_030--Hb_174829_040 Hb_052113_020 Hb_052113_020 Hb_075449_030--Hb_052113_020 Hb_003053_060 Hb_003053_060 Hb_075449_030--Hb_003053_060 Hb_000172_300 Hb_000172_300 Hb_116349_050--Hb_000172_300 Hb_116349_050--Hb_174829_040 Hb_000414_100 Hb_000414_100 Hb_116349_050--Hb_000414_100 Hb_116349_050--Hb_002042_190 Hb_048653_040 Hb_048653_040 Hb_116349_050--Hb_048653_040 Hb_000039_100 Hb_000039_100 Hb_116349_050--Hb_000039_100 Hb_002042_190--Hb_174829_040 Hb_002042_190--Hb_000142_010 Hb_002042_190--Hb_000172_300 Hb_002042_190--Hb_052113_020 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_000142_010--Hb_174829_040 Hb_000142_010--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_000142_010--Hb_003053_060 Hb_174829_040--Hb_002311_490 Hb_174829_040--Hb_000172_300 Hb_174829_040--Hb_000414_100 Hb_000506_130 Hb_000506_130 Hb_052113_020--Hb_000506_130 Hb_000245_270 Hb_000245_270 Hb_052113_020--Hb_000245_270 Hb_003800_010 Hb_003800_010 Hb_052113_020--Hb_003800_010 Hb_029238_020 Hb_029238_020 Hb_052113_020--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_052113_020--Hb_004143_050 Hb_015978_030 Hb_015978_030 Hb_003053_060--Hb_015978_030 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.038754 19.0792 0.23677 3.90194 0.252639 0.197049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.275745 0.216909 1.26975 0.769263 0.385298

CAGE analysis