Hb_000275_070

Information

Type -
Description -
Location Contig275: 88678-90523
Sequence    

Annotation

kegg
ID gmx:100811721
description CYSTM1 family protein B-like
nr
ID XP_012090795.1
description PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E9JFW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02469 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28807: 88684-90318 , PASA_asmbl_28808: 89773-90177
cDNA
(Sanger)
(ID:Location)		 008_F07.ab1: 88702-90333 , 027_H07.ab1: 88702-90318 , 031_G12.ab1: 88684-90320

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_070 0.0 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
2 Hb_005725_190 0.1717937184 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
3 Hb_000142_010 0.1761089684 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
4 Hb_000574_120 0.1908666936 - - conserved hypothetical protein [Ricinus communis]
5 Hb_013057_030 0.1910560744 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007218_140 0.191347317 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
7 Hb_000172_300 0.2009591251 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
8 Hb_174829_040 0.2020796252 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
9 Hb_047833_010 0.2036081871 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
10 Hb_002301_200 0.2052628779 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
11 Hb_003095_050 0.2055302015 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
12 Hb_002097_150 0.2059266366 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
13 Hb_116349_050 0.2066935081 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
14 Hb_000316_150 0.2068326932 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_015978_030 0.2122067539 - - Zinc finger protein GIS2 [Medicago truncatula]
16 Hb_004324_290 0.2168490018 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
17 Hb_001277_150 0.221240156 - - hypothetical protein VITISV_043492 [Vitis vinifera]
18 Hb_065500_040 0.2215206933 - - conserved hypothetical protein [Ricinus communis]
19 Hb_048653_040 0.2227370987 - - ankyrin repeat family protein [Populus trichocarpa]
20 Hb_000414_100 0.2230573768 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]

Gene co-expression network

sample Hb_000275_070 Hb_000275_070 Hb_005725_190 Hb_005725_190 Hb_000275_070--Hb_005725_190 Hb_000142_010 Hb_000142_010 Hb_000275_070--Hb_000142_010 Hb_000574_120 Hb_000574_120 Hb_000275_070--Hb_000574_120 Hb_013057_030 Hb_013057_030 Hb_000275_070--Hb_013057_030 Hb_007218_140 Hb_007218_140 Hb_000275_070--Hb_007218_140 Hb_000172_300 Hb_000172_300 Hb_000275_070--Hb_000172_300 Hb_005725_190--Hb_000574_120 Hb_002760_060 Hb_002760_060 Hb_005725_190--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_005725_190--Hb_003442_050 Hb_005725_190--Hb_013057_030 Hb_002301_200 Hb_002301_200 Hb_005725_190--Hb_002301_200 Hb_174829_040 Hb_174829_040 Hb_000142_010--Hb_174829_040 Hb_002042_190 Hb_002042_190 Hb_000142_010--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_000142_010--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_003053_060 Hb_003053_060 Hb_000142_010--Hb_003053_060 Hb_004324_290 Hb_004324_290 Hb_000574_120--Hb_004324_290 Hb_000316_150 Hb_000316_150 Hb_000574_120--Hb_000316_150 Hb_000072_330 Hb_000072_330 Hb_000574_120--Hb_000072_330 Hb_004787_100 Hb_004787_100 Hb_000574_120--Hb_004787_100 Hb_000574_120--Hb_013057_030 Hb_002217_440 Hb_002217_440 Hb_013057_030--Hb_002217_440 Hb_048653_040 Hb_048653_040 Hb_013057_030--Hb_048653_040 Hb_048653_020 Hb_048653_020 Hb_013057_030--Hb_048653_020 Hb_013057_030--Hb_000172_300 Hb_013057_030--Hb_116349_050 Hb_003086_050 Hb_003086_050 Hb_013057_030--Hb_003086_050 Hb_007218_140--Hb_000072_330 Hb_001902_150 Hb_001902_150 Hb_007218_140--Hb_001902_150 Hb_065500_040 Hb_065500_040 Hb_007218_140--Hb_065500_040 Hb_007218_140--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_007218_140--Hb_000975_330 Hb_000039_100 Hb_000039_100 Hb_000172_300--Hb_000039_100 Hb_000172_300--Hb_116349_050 Hb_000172_300--Hb_048653_040 Hb_011054_030 Hb_011054_030 Hb_000172_300--Hb_011054_030 Hb_000172_300--Hb_174829_040 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327458 509.121 14.4526 45.2746 0 0.198258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8585 54.9408 2.65339 29.0993 3.76639

CAGE analysis