Hb_003018_070

Information

Type -
Description -
Location Contig3018: 38774-39073
Sequence    

Annotation

kegg
ID tcc:TCM_046673
description SAUR family protein
nr
ID XP_007046722.1
description SAUR family protein, partial [Theobroma cacao]
swissprot
ID P33081
description Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
trembl
ID A0A061DFB9
description SAUR family protein (Fragment) OS=Theobroma cacao GN=TCM_046673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_070 0.0 - - SAUR family protein, partial [Theobroma cacao]
2 Hb_001189_060 0.1554314983 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_000186_210 0.2704392876 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_000275_070 0.278407176 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
5 Hb_009252_120 0.2827899059 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001902_150 0.2836808023 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
7 Hb_002211_040 0.283932068 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
8 Hb_000418_080 0.2988337542 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
9 Hb_006907_120 0.2999403012 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
10 Hb_002063_030 0.3029659017 - - -
11 Hb_003910_020 0.3058197736 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
12 Hb_007218_140 0.3100502972 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
13 Hb_000813_150 0.313339528 - - -
14 Hb_065500_040 0.3166610463 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001318_130 0.3198032488 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
16 Hb_000111_300 0.3248538712 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
17 Hb_005048_050 0.3253831827 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
18 Hb_006096_010 0.3264082839 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007105_010 0.3278798813 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
20 Hb_001369_290 0.3291683071 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003018_070 Hb_003018_070 Hb_001189_060 Hb_001189_060 Hb_003018_070--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_003018_070--Hb_000186_210 Hb_000275_070 Hb_000275_070 Hb_003018_070--Hb_000275_070 Hb_009252_120 Hb_009252_120 Hb_003018_070--Hb_009252_120 Hb_001902_150 Hb_001902_150 Hb_003018_070--Hb_001902_150 Hb_002211_040 Hb_002211_040 Hb_003018_070--Hb_002211_040 Hb_001189_060--Hb_000186_210 Hb_002063_030 Hb_002063_030 Hb_001189_060--Hb_002063_030 Hb_006907_120 Hb_006907_120 Hb_001189_060--Hb_006907_120 Hb_007105_010 Hb_007105_010 Hb_001189_060--Hb_007105_010 Hb_001189_060--Hb_001902_150 Hb_000186_210--Hb_006907_120 Hb_002316_040 Hb_002316_040 Hb_000186_210--Hb_002316_040 Hb_006096_010 Hb_006096_010 Hb_000186_210--Hb_006096_010 Hb_008864_070 Hb_008864_070 Hb_000186_210--Hb_008864_070 Hb_005725_190 Hb_005725_190 Hb_000275_070--Hb_005725_190 Hb_000142_010 Hb_000142_010 Hb_000275_070--Hb_000142_010 Hb_000574_120 Hb_000574_120 Hb_000275_070--Hb_000574_120 Hb_013057_030 Hb_013057_030 Hb_000275_070--Hb_013057_030 Hb_007218_140 Hb_007218_140 Hb_000275_070--Hb_007218_140 Hb_000172_300 Hb_000172_300 Hb_000275_070--Hb_000172_300 Hb_006816_160 Hb_006816_160 Hb_009252_120--Hb_006816_160 Hb_002820_120 Hb_002820_120 Hb_009252_120--Hb_002820_120 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_001902_150--Hb_007218_140 Hb_001902_150--Hb_002063_030 Hb_000072_330 Hb_000072_330 Hb_001902_150--Hb_000072_330 Hb_005048_050 Hb_005048_050 Hb_001902_150--Hb_005048_050 Hb_001902_150--Hb_000275_070 Hb_002401_010 Hb_002401_010 Hb_002211_040--Hb_002401_010 Hb_143629_030 Hb_143629_030 Hb_002211_040--Hb_143629_030 Hb_002301_200 Hb_002301_200 Hb_002211_040--Hb_002301_200 Hb_000111_300 Hb_000111_300 Hb_002211_040--Hb_000111_300 Hb_002211_040--Hb_000275_070 Hb_002211_040--Hb_005725_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.78654 0 1.84519 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49717 3.24313 0 1.2316 0

CAGE analysis