Hb_002401_010

Information

Type -
Description -
Location Contig2401: 3971-7702
Sequence    

Annotation

kegg
ID pda:103713573
description uncharacterized LOC103713573
nr
ID XP_009770762.1
description PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q6L3S3
description Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_41t00016 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002401_010 0.0 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
2 Hb_002211_040 0.1962636876 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
3 Hb_002301_200 0.2185120211 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
4 Hb_143629_030 0.2321145125 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
5 Hb_005725_190 0.2615937334 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
6 Hb_000111_300 0.2812091446 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
7 Hb_001902_150 0.2849264763 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
8 Hb_011689_140 0.2880342499 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
9 Hb_008195_040 0.2922664362 - - hypothetical protein VITISV_033788 [Vitis vinifera]
10 Hb_000275_070 0.2941019863 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
11 Hb_007218_140 0.2999845143 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
12 Hb_001638_010 0.3023021737 - - -
13 Hb_000574_120 0.3036728176 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002063_030 0.3042847747 - - -
15 Hb_000608_210 0.305124591 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
16 Hb_017647_020 0.3074742172 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_098988_010 0.30917204 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
18 Hb_000890_190 0.3185282708 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_000510_350 0.3202671193 - - Putative polyprotein [Oryza sativa Japonica Group]
20 Hb_003683_090 0.323220352 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002401_010 Hb_002401_010 Hb_002211_040 Hb_002211_040 Hb_002401_010--Hb_002211_040 Hb_002301_200 Hb_002301_200 Hb_002401_010--Hb_002301_200 Hb_143629_030 Hb_143629_030 Hb_002401_010--Hb_143629_030 Hb_005725_190 Hb_005725_190 Hb_002401_010--Hb_005725_190 Hb_000111_300 Hb_000111_300 Hb_002401_010--Hb_000111_300 Hb_001902_150 Hb_001902_150 Hb_002401_010--Hb_001902_150 Hb_002211_040--Hb_143629_030 Hb_002211_040--Hb_002301_200 Hb_002211_040--Hb_000111_300 Hb_000275_070 Hb_000275_070 Hb_002211_040--Hb_000275_070 Hb_002211_040--Hb_005725_190 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_002301_200--Hb_000111_300 Hb_002301_200--Hb_143629_030 Hb_000574_120 Hb_000574_120 Hb_002301_200--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_002301_200--Hb_000975_330 Hb_065500_040 Hb_065500_040 Hb_002301_200--Hb_065500_040 Hb_000216_010 Hb_000216_010 Hb_143629_030--Hb_000216_010 Hb_006503_010 Hb_006503_010 Hb_143629_030--Hb_006503_010 Hb_009775_040 Hb_009775_040 Hb_143629_030--Hb_009775_040 Hb_005725_190--Hb_000275_070 Hb_005725_190--Hb_000574_120 Hb_002760_060 Hb_002760_060 Hb_005725_190--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_005725_190--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_005725_190--Hb_013057_030 Hb_005725_190--Hb_002301_200 Hb_000417_290 Hb_000417_290 Hb_000111_300--Hb_000417_290 Hb_001863_100 Hb_001863_100 Hb_000111_300--Hb_001863_100 Hb_038758_010 Hb_038758_010 Hb_000111_300--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000111_300--Hb_002217_440 Hb_008616_060 Hb_008616_060 Hb_000111_300--Hb_008616_060 Hb_007218_140 Hb_007218_140 Hb_001902_150--Hb_007218_140 Hb_002063_030 Hb_002063_030 Hb_001902_150--Hb_002063_030 Hb_000072_330 Hb_000072_330 Hb_001902_150--Hb_000072_330 Hb_005048_050 Hb_005048_050 Hb_001902_150--Hb_005048_050 Hb_001902_150--Hb_000275_070 Hb_001189_060 Hb_001189_060 Hb_001902_150--Hb_001189_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0422379 0.00499472 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.012042 0 0.00477763 0

CAGE analysis