Hb_088117_010

Information

Type -
Description -
Location Contig88117: 2-1039
Sequence    

Annotation

kegg
ID rcu:RCOM_1500640
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002510965.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9R9U0
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1500640 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088117_010 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_185754_010 0.126420584 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_009252_120 0.2210683585 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000172_630 0.2225728102 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_026186_010 0.2249237657 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
6 Hb_006816_160 0.2311390892 - - hypothetical protein RCOM_1434920 [Ricinus communis]
7 Hb_008725_190 0.2382954371 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
8 Hb_000000_280 0.238467016 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001369_290 0.239505724 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_162047_010 0.2399387251 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
11 Hb_002820_120 0.2526872556 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
12 Hb_007304_100 0.2560875585 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
13 Hb_139569_010 0.2576941643 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
14 Hb_003800_010 0.2679935572 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
15 Hb_003023_080 0.2686105791 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_043115_010 0.2723679741 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
17 Hb_009620_010 0.2725575673 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
18 Hb_004767_010 0.2726134143 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
19 Hb_161954_010 0.2727097602 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
20 Hb_001227_010 0.2759737874 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]

Gene co-expression network

sample Hb_088117_010 Hb_088117_010 Hb_185754_010 Hb_185754_010 Hb_088117_010--Hb_185754_010 Hb_009252_120 Hb_009252_120 Hb_088117_010--Hb_009252_120 Hb_000172_630 Hb_000172_630 Hb_088117_010--Hb_000172_630 Hb_026186_010 Hb_026186_010 Hb_088117_010--Hb_026186_010 Hb_006816_160 Hb_006816_160 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_185754_010--Hb_000172_630 Hb_185754_010--Hb_026186_010 Hb_001016_020 Hb_001016_020 Hb_185754_010--Hb_001016_020 Hb_003023_080 Hb_003023_080 Hb_185754_010--Hb_003023_080 Hb_139569_010 Hb_139569_010 Hb_185754_010--Hb_139569_010 Hb_009252_120--Hb_006816_160 Hb_002820_120 Hb_002820_120 Hb_009252_120--Hb_002820_120 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_000172_630--Hb_026186_010 Hb_005097_010 Hb_005097_010 Hb_000172_630--Hb_005097_010 Hb_001369_290 Hb_001369_290 Hb_000172_630--Hb_001369_290 Hb_000172_630--Hb_001016_020 Hb_026186_010--Hb_001369_290 Hb_026186_010--Hb_139569_010 Hb_004453_190 Hb_004453_190 Hb_026186_010--Hb_004453_190 Hb_006816_160--Hb_002820_120 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_000445_010 Hb_000445_010 Hb_006816_160--Hb_000445_010 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_001227_010 Hb_001227_010 Hb_008725_190--Hb_001227_010 Hb_007304_100 Hb_007304_100 Hb_008725_190--Hb_007304_100 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07542 0.0158202 1.04048 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.266398 0.0702168 0.0611638 0

CAGE analysis