Hb_005097_010

Information

Type -
Description -
Location Contig5097: 99386-101624
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02300g
description POPTRDRAFT_204165; hypothetical protein
nr
ID XP_011003844.1
description PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
swissprot
ID Q9SJE8
description Aluminum-activated malate transporter 2 OS=Arabidopsis thaliana GN=ALMT2 PE=2 SV=2
trembl
ID B9HQ63
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s02300g PE=4 SV=2
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46232: 100914-101426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005097_010 0.0 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
2 Hb_005408_110 0.217560014 - - purine permease, putative [Ricinus communis]
3 Hb_002686_100 0.2216617658 - - -
4 Hb_001097_080 0.2239118476 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
5 Hb_000172_630 0.2266274999 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_000358_130 0.2318935374 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
7 Hb_013399_040 0.2350045517 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
8 Hb_170674_020 0.2350622599 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
9 Hb_000327_050 0.2351625801 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
10 Hb_000318_070 0.2352690994 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
11 Hb_002304_120 0.2355442444 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000321_020 0.2360265793 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
13 Hb_001998_160 0.2365825592 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
14 Hb_002217_480 0.2380452238 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
15 Hb_001147_120 0.2386735238 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
16 Hb_001825_030 0.2393763627 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
17 Hb_004148_030 0.239383584 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
18 Hb_000284_090 0.2394954674 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_009501_010 0.2396896226 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_001396_080 0.2416221244 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005097_010 Hb_005097_010 Hb_005408_110 Hb_005408_110 Hb_005097_010--Hb_005408_110 Hb_002686_100 Hb_002686_100 Hb_005097_010--Hb_002686_100 Hb_001097_080 Hb_001097_080 Hb_005097_010--Hb_001097_080 Hb_000172_630 Hb_000172_630 Hb_005097_010--Hb_000172_630 Hb_000358_130 Hb_000358_130 Hb_005097_010--Hb_000358_130 Hb_013399_040 Hb_013399_040 Hb_005097_010--Hb_013399_040 Hb_001628_040 Hb_001628_040 Hb_005408_110--Hb_001628_040 Hb_003252_030 Hb_003252_030 Hb_005408_110--Hb_003252_030 Hb_003747_080 Hb_003747_080 Hb_005408_110--Hb_003747_080 Hb_137821_010 Hb_137821_010 Hb_005408_110--Hb_137821_010 Hb_031822_020 Hb_031822_020 Hb_005408_110--Hb_031822_020 Hb_120496_010 Hb_120496_010 Hb_005408_110--Hb_120496_010 Hb_004208_120 Hb_004208_120 Hb_002686_100--Hb_004208_120 Hb_052640_010 Hb_052640_010 Hb_002686_100--Hb_052640_010 Hb_003540_180 Hb_003540_180 Hb_002686_100--Hb_003540_180 Hb_016734_050 Hb_016734_050 Hb_002686_100--Hb_016734_050 Hb_002686_100--Hb_001097_080 Hb_003411_120 Hb_003411_120 Hb_001097_080--Hb_003411_120 Hb_147137_010 Hb_147137_010 Hb_001097_080--Hb_147137_010 Hb_007382_130 Hb_007382_130 Hb_001097_080--Hb_007382_130 Hb_000470_060 Hb_000470_060 Hb_001097_080--Hb_000470_060 Hb_012799_080 Hb_012799_080 Hb_001097_080--Hb_012799_080 Hb_001097_080--Hb_016734_050 Hb_026186_010 Hb_026186_010 Hb_000172_630--Hb_026186_010 Hb_088117_010 Hb_088117_010 Hb_000172_630--Hb_088117_010 Hb_001369_290 Hb_001369_290 Hb_000172_630--Hb_001369_290 Hb_185754_010 Hb_185754_010 Hb_000172_630--Hb_185754_010 Hb_001016_020 Hb_001016_020 Hb_000172_630--Hb_001016_020 Hb_001396_080 Hb_001396_080 Hb_000358_130--Hb_001396_080 Hb_003226_130 Hb_003226_130 Hb_000358_130--Hb_003226_130 Hb_005356_050 Hb_005356_050 Hb_000358_130--Hb_005356_050 Hb_009010_040 Hb_009010_040 Hb_000358_130--Hb_009010_040 Hb_000723_210 Hb_000723_210 Hb_000358_130--Hb_000723_210 Hb_000352_240 Hb_000352_240 Hb_000358_130--Hb_000352_240 Hb_000327_050 Hb_000327_050 Hb_013399_040--Hb_000327_050 Hb_170674_020 Hb_170674_020 Hb_013399_040--Hb_170674_020 Hb_002304_120 Hb_002304_120 Hb_013399_040--Hb_002304_120 Hb_000318_070 Hb_000318_070 Hb_013399_040--Hb_000318_070 Hb_000321_020 Hb_000321_020 Hb_013399_040--Hb_000321_020 Hb_001998_160 Hb_001998_160 Hb_013399_040--Hb_001998_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0285429 0 0.18781 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0256922 0 0 0

CAGE analysis