Hb_002686_100

Information

Type -
Description -
Location Contig2686: 54678-55408
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27999: 54678-55506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_100 0.0 - - -
2 Hb_004208_120 0.1053177052 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
3 Hb_052640_010 0.1748714684 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
4 Hb_005097_010 0.2216617658 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
5 Hb_003540_180 0.2390141072 - - -
6 Hb_016734_050 0.2440294399 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_001097_080 0.2540405645 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
8 Hb_000352_240 0.2543099484 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_002367_030 0.2585437255 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
10 Hb_005408_110 0.2624783925 - - purine permease, putative [Ricinus communis]
11 Hb_017862_040 0.2645664613 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
12 Hb_001628_040 0.2729944259 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
13 Hb_001633_190 0.2741414062 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
14 Hb_001102_310 0.2759370195 - - Protein AFR, putative [Ricinus communis]
15 Hb_000358_130 0.2782513681 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
16 Hb_000009_490 0.2801797531 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
17 Hb_001157_070 0.2807868508 - - -
18 Hb_000035_510 0.281801926 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
19 Hb_091537_010 0.2820458294 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_001153_070 0.2829782012 - - -

Gene co-expression network

sample Hb_002686_100 Hb_002686_100 Hb_004208_120 Hb_004208_120 Hb_002686_100--Hb_004208_120 Hb_052640_010 Hb_052640_010 Hb_002686_100--Hb_052640_010 Hb_005097_010 Hb_005097_010 Hb_002686_100--Hb_005097_010 Hb_003540_180 Hb_003540_180 Hb_002686_100--Hb_003540_180 Hb_016734_050 Hb_016734_050 Hb_002686_100--Hb_016734_050 Hb_001097_080 Hb_001097_080 Hb_002686_100--Hb_001097_080 Hb_004208_120--Hb_052640_010 Hb_001157_070 Hb_001157_070 Hb_004208_120--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_004208_120--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_004208_120--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_004208_120--Hb_012366_010 Hb_001633_190 Hb_001633_190 Hb_052640_010--Hb_001633_190 Hb_002367_030 Hb_002367_030 Hb_052640_010--Hb_002367_030 Hb_052640_010--Hb_003540_180 Hb_017400_010 Hb_017400_010 Hb_052640_010--Hb_017400_010 Hb_005408_110 Hb_005408_110 Hb_005097_010--Hb_005408_110 Hb_005097_010--Hb_001097_080 Hb_000172_630 Hb_000172_630 Hb_005097_010--Hb_000172_630 Hb_000358_130 Hb_000358_130 Hb_005097_010--Hb_000358_130 Hb_013399_040 Hb_013399_040 Hb_005097_010--Hb_013399_040 Hb_003540_180--Hb_002367_030 Hb_001102_310 Hb_001102_310 Hb_003540_180--Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_003540_180--Hb_091537_010 Hb_003540_180--Hb_017400_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_015175_060 Hb_015175_060 Hb_016734_050--Hb_015175_060 Hb_000541_030 Hb_000541_030 Hb_016734_050--Hb_000541_030 Hb_029508_020 Hb_029508_020 Hb_016734_050--Hb_029508_020 Hb_012799_080 Hb_012799_080 Hb_016734_050--Hb_012799_080 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080 Hb_003411_120 Hb_003411_120 Hb_001097_080--Hb_003411_120 Hb_147137_010 Hb_147137_010 Hb_001097_080--Hb_147137_010 Hb_007382_130 Hb_007382_130 Hb_001097_080--Hb_007382_130 Hb_000470_060 Hb_000470_060 Hb_001097_080--Hb_000470_060 Hb_001097_080--Hb_012799_080 Hb_001097_080--Hb_016734_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.572214 0 11.1573 0.98847 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.51487 0 0 0

CAGE analysis