Hb_052640_010

Information

Type -
Description -
Location Contig52640: 276-416
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35580g
description POPTRDRAFT_752585; oxidoreductase family protein
nr
ID XP_012085318.1
description PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
swissprot
ID Q9SV68
description Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1
trembl
ID M1C990
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024346 PE=4 SV=1
Gene Ontology
ID GO:0008270
description quinone-oxidoreductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052640_010 0.0 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
2 Hb_002686_100 0.1748714684 - - -
3 Hb_004208_120 0.1811724838 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
4 Hb_001633_190 0.2069548716 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
5 Hb_002367_030 0.2627774421 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
6 Hb_003540_180 0.2675512468 - - -
7 Hb_017400_010 0.2822957906 - - unnamed protein product [Vitis vinifera]
8 Hb_089785_010 0.2848225727 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
9 Hb_012366_010 0.2856895542 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
10 Hb_001157_070 0.288648059 - - -
11 Hb_000009_490 0.2896361923 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
12 Hb_001102_310 0.2901175852 - - Protein AFR, putative [Ricinus communis]
13 Hb_019818_010 0.2964232291 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
14 Hb_091537_010 0.3059318948 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_001153_070 0.3077928572 - - -
16 Hb_003517_030 0.3088180745 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
17 Hb_013654_030 0.312748523 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
18 Hb_033153_080 0.3129250813 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
19 Hb_012092_070 0.3139680222 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
20 Hb_078804_010 0.3179288855 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_052640_010 Hb_052640_010 Hb_002686_100 Hb_002686_100 Hb_052640_010--Hb_002686_100 Hb_004208_120 Hb_004208_120 Hb_052640_010--Hb_004208_120 Hb_001633_190 Hb_001633_190 Hb_052640_010--Hb_001633_190 Hb_002367_030 Hb_002367_030 Hb_052640_010--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_052640_010--Hb_003540_180 Hb_017400_010 Hb_017400_010 Hb_052640_010--Hb_017400_010 Hb_002686_100--Hb_004208_120 Hb_005097_010 Hb_005097_010 Hb_002686_100--Hb_005097_010 Hb_002686_100--Hb_003540_180 Hb_016734_050 Hb_016734_050 Hb_002686_100--Hb_016734_050 Hb_001097_080 Hb_001097_080 Hb_002686_100--Hb_001097_080 Hb_001157_070 Hb_001157_070 Hb_004208_120--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_004208_120--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_004208_120--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_004208_120--Hb_012366_010 Hb_004947_010 Hb_004947_010 Hb_001633_190--Hb_004947_010 Hb_033153_080 Hb_033153_080 Hb_001633_190--Hb_033153_080 Hb_016875_010 Hb_016875_010 Hb_001633_190--Hb_016875_010 Hb_001633_190--Hb_002686_100 Hb_094529_020 Hb_094529_020 Hb_001633_190--Hb_094529_020 Hb_002367_030--Hb_017400_010 Hb_002367_030--Hb_003540_180 Hb_019818_010 Hb_019818_010 Hb_002367_030--Hb_019818_010 Hb_001102_310 Hb_001102_310 Hb_002367_030--Hb_001102_310 Hb_012092_070 Hb_012092_070 Hb_002367_030--Hb_012092_070 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010 Hb_003540_180--Hb_001102_310 Hb_003540_180--Hb_091537_010 Hb_003540_180--Hb_017400_010 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_017400_010--Hb_019818_010 Hb_017400_010--Hb_012092_070 Hb_132840_120 Hb_132840_120 Hb_017400_010--Hb_132840_120 Hb_017400_010--Hb_001102_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 69.9725 12.5746 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 14.7653 0 0 0

CAGE analysis