Hb_004208_120

Information

Type -
Description -
Location Contig4208: 104944-105489
Sequence    

Annotation

kegg
ID egr:104428079
description uncharacterized LOC104428079
nr
ID XP_010039376.1
description PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID I1HEU9
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI2G11590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_120 0.0 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
2 Hb_002686_100 0.1053177052 - - -
3 Hb_052640_010 0.1811724838 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
4 Hb_001157_070 0.2016944989 - - -
5 Hb_000009_490 0.2021239133 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
6 Hb_089785_010 0.2127671864 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
7 Hb_012366_010 0.2154982919 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
8 Hb_000702_050 0.2353474675 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
9 Hb_017862_040 0.2407036416 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
10 Hb_016734_050 0.2454070191 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_003517_030 0.2606144203 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
12 Hb_001628_040 0.2664348856 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
13 Hb_000367_040 0.2704321404 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_005408_110 0.2717312881 - - purine permease, putative [Ricinus communis]
15 Hb_148777_020 0.2754575098 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
16 Hb_000035_510 0.2774649247 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
17 Hb_002820_100 0.2780048598 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
18 Hb_004531_180 0.2781168332 - - nitrate transporter, putative [Ricinus communis]
19 Hb_003540_180 0.2789113862 - - -
20 Hb_000331_660 0.2816293731 - - PREDICTED: vignain [Jatropha curcas]

Gene co-expression network

sample Hb_004208_120 Hb_004208_120 Hb_002686_100 Hb_002686_100 Hb_004208_120--Hb_002686_100 Hb_052640_010 Hb_052640_010 Hb_004208_120--Hb_052640_010 Hb_001157_070 Hb_001157_070 Hb_004208_120--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_004208_120--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_004208_120--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_004208_120--Hb_012366_010 Hb_002686_100--Hb_052640_010 Hb_005097_010 Hb_005097_010 Hb_002686_100--Hb_005097_010 Hb_003540_180 Hb_003540_180 Hb_002686_100--Hb_003540_180 Hb_016734_050 Hb_016734_050 Hb_002686_100--Hb_016734_050 Hb_001097_080 Hb_001097_080 Hb_002686_100--Hb_001097_080 Hb_001633_190 Hb_001633_190 Hb_052640_010--Hb_001633_190 Hb_002367_030 Hb_002367_030 Hb_052640_010--Hb_002367_030 Hb_052640_010--Hb_003540_180 Hb_017400_010 Hb_017400_010 Hb_052640_010--Hb_017400_010 Hb_001157_070--Hb_000009_490 Hb_001157_070--Hb_089785_010 Hb_001157_070--Hb_012366_010 Hb_000702_050 Hb_000702_050 Hb_001157_070--Hb_000702_050 Hb_003517_030 Hb_003517_030 Hb_001157_070--Hb_003517_030 Hb_000367_040 Hb_000367_040 Hb_001157_070--Hb_000367_040 Hb_000009_490--Hb_089785_010 Hb_000009_490--Hb_012366_010 Hb_000009_490--Hb_000702_050 Hb_000009_490--Hb_000367_040 Hb_000009_490--Hb_003517_030 Hb_089785_010--Hb_012366_010 Hb_089785_010--Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_089785_010--Hb_148777_020 Hb_176082_010 Hb_176082_010 Hb_089785_010--Hb_176082_010 Hb_012366_010--Hb_003517_030 Hb_012366_010--Hb_148777_020 Hb_012366_010--Hb_176082_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0576277 0 1.86778 0.251053 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.123194 0 0 0

CAGE analysis