Hb_001633_190

Information

Type -
Description -
Location Contig1633: 157485-158947
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05990g
description POPTRDRAFT_563935; dehydration-responsive family protein
nr
ID XP_012088627.1
description PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
swissprot
ID O22285
description Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1
trembl
ID A0A067LJP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01390 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable methyltransferase pmt11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_190 0.0 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
2 Hb_052640_010 0.2069548716 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
3 Hb_004947_010 0.2386648036 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_033153_080 0.2514964969 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
5 Hb_016875_010 0.2548327594 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_002686_100 0.2741414062 - - -
7 Hb_094529_020 0.2753399006 - - leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_000160_050 0.275391927 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
9 Hb_008054_060 0.2860499475 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
10 Hb_078804_010 0.2895453628 - - kinase, putative [Ricinus communis]
11 Hb_004208_120 0.2961681022 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
12 Hb_002367_030 0.311829982 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
13 Hb_017400_010 0.3154401125 - - unnamed protein product [Vitis vinifera]
14 Hb_019818_010 0.3223632925 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
15 Hb_000367_040 0.3265657916 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_112440_010 0.331098708 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_003540_180 0.3319329894 - - -
18 Hb_012092_070 0.3327237978 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
19 Hb_011476_020 0.3339752179 - - PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
20 Hb_003095_080 0.3392434846 - - -

Gene co-expression network

sample Hb_001633_190 Hb_001633_190 Hb_052640_010 Hb_052640_010 Hb_001633_190--Hb_052640_010 Hb_004947_010 Hb_004947_010 Hb_001633_190--Hb_004947_010 Hb_033153_080 Hb_033153_080 Hb_001633_190--Hb_033153_080 Hb_016875_010 Hb_016875_010 Hb_001633_190--Hb_016875_010 Hb_002686_100 Hb_002686_100 Hb_001633_190--Hb_002686_100 Hb_094529_020 Hb_094529_020 Hb_001633_190--Hb_094529_020 Hb_052640_010--Hb_002686_100 Hb_004208_120 Hb_004208_120 Hb_052640_010--Hb_004208_120 Hb_002367_030 Hb_002367_030 Hb_052640_010--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_052640_010--Hb_003540_180 Hb_017400_010 Hb_017400_010 Hb_052640_010--Hb_017400_010 Hb_004947_010--Hb_016875_010 Hb_008054_060 Hb_008054_060 Hb_004947_010--Hb_008054_060 Hb_004947_010--Hb_033153_080 Hb_004947_010--Hb_094529_020 Hb_112440_010 Hb_112440_010 Hb_004947_010--Hb_112440_010 Hb_000160_050 Hb_000160_050 Hb_004947_010--Hb_000160_050 Hb_033153_080--Hb_000160_050 Hb_033153_080--Hb_094529_020 Hb_033153_080--Hb_016875_010 Hb_033153_080--Hb_003540_180 Hb_033153_080--Hb_002367_030 Hb_016875_010--Hb_000160_050 Hb_003095_080 Hb_003095_080 Hb_016875_010--Hb_003095_080 Hb_016875_010--Hb_008054_060 Hb_016875_010--Hb_094529_020 Hb_002686_100--Hb_004208_120 Hb_005097_010 Hb_005097_010 Hb_002686_100--Hb_005097_010 Hb_002686_100--Hb_003540_180 Hb_016734_050 Hb_016734_050 Hb_002686_100--Hb_016734_050 Hb_001097_080 Hb_001097_080 Hb_002686_100--Hb_001097_080 Hb_001248_120 Hb_001248_120 Hb_094529_020--Hb_001248_120 Hb_094529_020--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_094529_020--Hb_003411_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.239867 0.0394545 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0714002 0 0.0291639 0

CAGE analysis