Hb_001248_120

Information

Type -
Description -
Location Contig1248: 124007-129135
Sequence    

Annotation

kegg
ID rcu:RCOM_1523320
description hypothetical protein
nr
ID XP_002513164.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1523320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07520: 123929-124448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_094529_020 0.1976024595 - - leucine-rich repeat containing protein, putative [Ricinus communis]
3 Hb_005529_020 0.2114957332 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
4 Hb_001195_670 0.2130892592 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
5 Hb_000160_050 0.2275290671 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
6 Hb_003411_120 0.2310588749 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
7 Hb_000450_170 0.231602569 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009178_050 0.2332273192 - - Elongation factor 1-alpha, putative [Ricinus communis]
9 Hb_001277_060 0.2369399586 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
10 Hb_007382_130 0.2371377619 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
11 Hb_033153_080 0.2373702473 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
12 Hb_000313_280 0.2378629343 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
13 Hb_003226_130 0.2402971429 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
14 Hb_000617_300 0.2415893159 - - RALFL33, putative [Ricinus communis]
15 Hb_014720_100 0.242761508 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
16 Hb_002582_080 0.2484692698 - - -
17 Hb_002936_020 0.2544597944 - - hypothetical protein VITISV_001748 [Vitis vinifera]
18 Hb_048384_010 0.2558160593 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
19 Hb_003813_010 0.2576927877 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
20 Hb_016120_030 0.2578764323 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001248_120 Hb_001248_120 Hb_094529_020 Hb_094529_020 Hb_001248_120--Hb_094529_020 Hb_005529_020 Hb_005529_020 Hb_001248_120--Hb_005529_020 Hb_001195_670 Hb_001195_670 Hb_001248_120--Hb_001195_670 Hb_000160_050 Hb_000160_050 Hb_001248_120--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_001248_120--Hb_003411_120 Hb_000450_170 Hb_000450_170 Hb_001248_120--Hb_000450_170 Hb_033153_080 Hb_033153_080 Hb_094529_020--Hb_033153_080 Hb_004947_010 Hb_004947_010 Hb_094529_020--Hb_004947_010 Hb_094529_020--Hb_000160_050 Hb_094529_020--Hb_003411_120 Hb_016875_010 Hb_016875_010 Hb_094529_020--Hb_016875_010 Hb_005529_020--Hb_001195_670 Hb_005529_020--Hb_000450_170 Hb_001186_110 Hb_001186_110 Hb_005529_020--Hb_001186_110 Hb_014720_100 Hb_014720_100 Hb_005529_020--Hb_014720_100 Hb_003001_050 Hb_003001_050 Hb_005529_020--Hb_003001_050 Hb_006538_160 Hb_006538_160 Hb_005529_020--Hb_006538_160 Hb_001195_670--Hb_000450_170 Hb_000028_620 Hb_000028_620 Hb_001195_670--Hb_000028_620 Hb_001195_670--Hb_003001_050 Hb_000015_140 Hb_000015_140 Hb_001195_670--Hb_000015_140 Hb_066207_020 Hb_066207_020 Hb_001195_670--Hb_066207_020 Hb_000160_050--Hb_033153_080 Hb_000160_050--Hb_016875_010 Hb_000160_050--Hb_004947_010 Hb_051677_010 Hb_051677_010 Hb_000160_050--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_000160_050--Hb_002391_060 Hb_001097_080 Hb_001097_080 Hb_003411_120--Hb_001097_080 Hb_000617_300 Hb_000617_300 Hb_003411_120--Hb_000617_300 Hb_147137_010 Hb_147137_010 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_000320_030 Hb_000320_030 Hb_000450_170--Hb_000320_030 Hb_000313_280 Hb_000313_280 Hb_000450_170--Hb_000313_280 Hb_000450_170--Hb_000015_140 Hb_002894_070 Hb_002894_070 Hb_000450_170--Hb_002894_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.557165 3.63186 3.82981 160.315 0 0.786443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.63653 19.5954 3.80785 20.4152 1.65809

CAGE analysis