Hb_012092_070

Information

Type -
Description -
Location Contig12092: 57416-58146
Sequence    

Annotation

kegg
ID tcc:TCM_018610
description hypothetical protein
nr
ID XP_012084724.1
description PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EF06
description Uncharacterized protein OS=Theobroma cacao GN=TCM_018610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_070 0.0 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
2 Hb_019818_010 0.0356414894 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
3 Hb_017400_010 0.069874356 - - unnamed protein product [Vitis vinifera]
4 Hb_132840_120 0.0771256635 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
5 Hb_004728_030 0.137107713 - - hypothetical protein, partial [Lactobacillus brevis]
6 Hb_002367_030 0.1465345036 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
7 Hb_001184_140 0.1620857443 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
8 Hb_001102_310 0.2349107472 - - Protein AFR, putative [Ricinus communis]
9 Hb_004947_010 0.2399821779 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_003540_180 0.243639765 - - -
11 Hb_006746_010 0.2572211568 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_067034_020 0.2611546711 - - PREDICTED: iridoid synthase [Jatropha curcas]
13 Hb_000836_150 0.2615303832 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
14 Hb_094529_020 0.2654672632 - - leucine-rich repeat containing protein, putative [Ricinus communis]
15 Hb_001085_140 0.27208688 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008054_060 0.2756410216 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
17 Hb_033153_080 0.2788326647 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
18 Hb_091537_010 0.2868723049 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_008609_030 0.3093767157 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_052640_010 0.3139680222 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012092_070 Hb_012092_070 Hb_019818_010 Hb_019818_010 Hb_012092_070--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_012092_070--Hb_017400_010 Hb_132840_120 Hb_132840_120 Hb_012092_070--Hb_132840_120 Hb_004728_030 Hb_004728_030 Hb_012092_070--Hb_004728_030 Hb_002367_030 Hb_002367_030 Hb_012092_070--Hb_002367_030 Hb_001184_140 Hb_001184_140 Hb_012092_070--Hb_001184_140 Hb_019818_010--Hb_017400_010 Hb_019818_010--Hb_002367_030 Hb_019818_010--Hb_132840_120 Hb_019818_010--Hb_001184_140 Hb_019818_010--Hb_004728_030 Hb_017400_010--Hb_002367_030 Hb_017400_010--Hb_132840_120 Hb_003540_180 Hb_003540_180 Hb_017400_010--Hb_003540_180 Hb_001102_310 Hb_001102_310 Hb_017400_010--Hb_001102_310 Hb_132840_120--Hb_004728_030 Hb_132840_120--Hb_001184_140 Hb_006746_010 Hb_006746_010 Hb_132840_120--Hb_006746_010 Hb_004728_030--Hb_006746_010 Hb_008609_030 Hb_008609_030 Hb_004728_030--Hb_008609_030 Hb_004728_030--Hb_001184_140 Hb_002367_030--Hb_003540_180 Hb_002367_030--Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_002367_030--Hb_091537_010 Hb_001184_140--Hb_017400_010 Hb_001184_140--Hb_002367_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.469545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 0 0 0

CAGE analysis