Hb_000172_630

Information

Type -
Description -
Location Contig172: 690460-692184
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_630 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_026186_010 0.1039875792 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
3 Hb_088117_010 0.2225728102 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_005097_010 0.2266274999 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
5 Hb_001369_290 0.2394938435 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_185754_010 0.2474251069 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_001016_020 0.2844951513 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004453_190 0.2855344164 - - -
9 Hb_139569_010 0.293866375 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
10 Hb_006816_160 0.3040600444 - - hypothetical protein RCOM_1434920 [Ricinus communis]
11 Hb_012753_180 0.3060490072 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
12 Hb_000259_100 0.3068872263 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_000115_260 0.3071870141 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
14 Hb_005511_070 0.3072639073 - - -
15 Hb_005306_200 0.3075206004 - - -
16 Hb_000903_050 0.3077074183 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
17 Hb_001184_140 0.3080256857 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
18 Hb_022264_010 0.3104665334 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
19 Hb_031022_040 0.3104856111 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
20 Hb_041849_010 0.3137180075 - - beta-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_630 Hb_000172_630 Hb_026186_010 Hb_026186_010 Hb_000172_630--Hb_026186_010 Hb_088117_010 Hb_088117_010 Hb_000172_630--Hb_088117_010 Hb_005097_010 Hb_005097_010 Hb_000172_630--Hb_005097_010 Hb_001369_290 Hb_001369_290 Hb_000172_630--Hb_001369_290 Hb_185754_010 Hb_185754_010 Hb_000172_630--Hb_185754_010 Hb_001016_020 Hb_001016_020 Hb_000172_630--Hb_001016_020 Hb_026186_010--Hb_001369_290 Hb_026186_010--Hb_088117_010 Hb_139569_010 Hb_139569_010 Hb_026186_010--Hb_139569_010 Hb_026186_010--Hb_185754_010 Hb_004453_190 Hb_004453_190 Hb_026186_010--Hb_004453_190 Hb_088117_010--Hb_185754_010 Hb_009252_120 Hb_009252_120 Hb_088117_010--Hb_009252_120 Hb_006816_160 Hb_006816_160 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_005408_110 Hb_005408_110 Hb_005097_010--Hb_005408_110 Hb_002686_100 Hb_002686_100 Hb_005097_010--Hb_002686_100 Hb_001097_080 Hb_001097_080 Hb_005097_010--Hb_001097_080 Hb_000358_130 Hb_000358_130 Hb_005097_010--Hb_000358_130 Hb_013399_040 Hb_013399_040 Hb_005097_010--Hb_013399_040 Hb_001369_290--Hb_139569_010 Hb_001369_290--Hb_088117_010 Hb_001369_290--Hb_185754_010 Hb_005694_030 Hb_005694_030 Hb_001369_290--Hb_005694_030 Hb_185754_010--Hb_001016_020 Hb_003023_080 Hb_003023_080 Hb_185754_010--Hb_003023_080 Hb_185754_010--Hb_139569_010 Hb_005170_020 Hb_005170_020 Hb_001016_020--Hb_005170_020 Hb_000111_200 Hb_000111_200 Hb_001016_020--Hb_000111_200 Hb_023768_020 Hb_023768_020 Hb_001016_020--Hb_023768_020 Hb_001016_020--Hb_004453_190 Hb_108670_010 Hb_108670_010 Hb_001016_020--Hb_108670_010 Hb_001404_030 Hb_001404_030 Hb_001016_020--Hb_001404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0817462 0 0.146962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.048855 0 0 0

CAGE analysis