Hb_005694_030

Information

Type -
Description -
Location Contig5694: 18733-19950
Sequence    

Annotation

kegg
ID rcu:RCOM_0716160
description ubiquitin-protein ligase, putative
nr
ID XP_012083817.1
description PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]
swissprot
ID Q84TG3
description E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1
trembl
ID B9SBD7
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0716160 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]
2 Hb_001998_130 0.1252097919 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
3 Hb_013862_010 0.1281724443 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
4 Hb_001510_050 0.1493544475 - - zinc finger protein, putative [Ricinus communis]
5 Hb_007371_010 0.1503486355 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
6 Hb_009230_050 0.1553531552 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
7 Hb_008296_010 0.1555477022 - - -
8 Hb_001784_010 0.1556332641 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_010615_010 0.156070879 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
10 Hb_070850_010 0.1564367502 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
11 Hb_007556_010 0.1565608942 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
12 Hb_000103_280 0.1566719878 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
13 Hb_003938_150 0.1567717421 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
14 Hb_001693_030 0.161537481 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
15 Hb_004607_180 0.1616642344 - - conserved hypothetical protein [Ricinus communis]
16 Hb_023675_020 0.1616645152 - - acc synthase, putative [Ricinus communis]
17 Hb_023502_010 0.1646927307 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_000206_280 0.1656081319 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
19 Hb_162047_010 0.1656743235 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
20 Hb_117335_020 0.1674443834 - - hypothetical protein JCGZ_09913 [Jatropha curcas]

Gene co-expression network

sample Hb_005694_030 Hb_005694_030 Hb_001998_130 Hb_001998_130 Hb_005694_030--Hb_001998_130 Hb_013862_010 Hb_013862_010 Hb_005694_030--Hb_013862_010 Hb_001510_050 Hb_001510_050 Hb_005694_030--Hb_001510_050 Hb_007371_010 Hb_007371_010 Hb_005694_030--Hb_007371_010 Hb_009230_050 Hb_009230_050 Hb_005694_030--Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_005694_030--Hb_008296_010 Hb_001998_130--Hb_013862_010 Hb_004089_010 Hb_004089_010 Hb_001998_130--Hb_004089_010 Hb_023502_010 Hb_023502_010 Hb_001998_130--Hb_023502_010 Hb_000206_280 Hb_000206_280 Hb_001998_130--Hb_000206_280 Hb_091826_010 Hb_091826_010 Hb_001998_130--Hb_091826_010 Hb_077562_010 Hb_077562_010 Hb_001998_130--Hb_077562_010 Hb_070850_010 Hb_070850_010 Hb_013862_010--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_013862_010--Hb_007556_010 Hb_003938_150 Hb_003938_150 Hb_013862_010--Hb_003938_150 Hb_013862_010--Hb_009230_050 Hb_013862_010--Hb_008296_010 Hb_001784_010 Hb_001784_010 Hb_013862_010--Hb_001784_010 Hb_001510_050--Hb_007371_010 Hb_004098_010 Hb_004098_010 Hb_001510_050--Hb_004098_010 Hb_000369_150 Hb_000369_150 Hb_001510_050--Hb_000369_150 Hb_133646_010 Hb_133646_010 Hb_001510_050--Hb_133646_010 Hb_176149_010 Hb_176149_010 Hb_001510_050--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_001510_050--Hb_000128_010 Hb_010368_040 Hb_010368_040 Hb_007371_010--Hb_010368_040 Hb_007371_010--Hb_133646_010 Hb_000336_160 Hb_000336_160 Hb_007371_010--Hb_000336_160 Hb_001693_030 Hb_001693_030 Hb_007371_010--Hb_001693_030 Hb_007371_010--Hb_004098_010 Hb_009230_050--Hb_008296_010 Hb_009230_050--Hb_001784_010 Hb_010615_010 Hb_010615_010 Hb_009230_050--Hb_010615_010 Hb_000103_280 Hb_000103_280 Hb_009230_050--Hb_000103_280 Hb_009230_050--Hb_070850_010 Hb_009230_050--Hb_007556_010 Hb_008296_010--Hb_001784_010 Hb_008296_010--Hb_010615_010 Hb_008296_010--Hb_000103_280 Hb_008296_010--Hb_070850_010 Hb_008296_010--Hb_007556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.879399 0 0.254805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.031351 0 0.0251109 0

CAGE analysis