Hb_003023_080

Information

Type transcription factor
Description TF Family: ERF
Location Contig3023: 122924-123496
Sequence    

Annotation

kegg
ID rcu:RCOM_0168650
description DNA binding protein, putative
nr
ID XP_002534096.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9C9I2
description Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1
trembl
ID B9T777
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0168650 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf021-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003023_080 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_125884_010 0.1395632561 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
3 Hb_019026_030 0.148721764 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
4 Hb_005976_040 0.1581825275 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
5 Hb_004143_050 0.1743979398 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
6 Hb_032920_040 0.1844746178 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
7 Hb_000805_150 0.1852685818 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
8 Hb_004079_040 0.1861757101 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
9 Hb_001213_140 0.1906284862 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
10 Hb_018563_020 0.1939411778 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
11 Hb_007441_150 0.1939948477 - - Ankyrin repeat family protein [Theobroma cacao]
12 Hb_001404_010 0.1950534755 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
13 Hb_000245_270 0.1954769613 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_116349_090 0.1958482575 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
15 Hb_005496_070 0.1985454149 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
16 Hb_003800_010 0.1990742551 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
17 Hb_000988_020 0.2034772884 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
18 Hb_000000_280 0.2036642895 - - conserved hypothetical protein [Ricinus communis]
19 Hb_029238_020 0.2057648104 - - PREDICTED: expansin-like A1 [Jatropha curcas]
20 Hb_002053_030 0.2072452727 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003023_080 Hb_003023_080 Hb_125884_010 Hb_125884_010 Hb_003023_080--Hb_125884_010 Hb_019026_030 Hb_019026_030 Hb_003023_080--Hb_019026_030 Hb_005976_040 Hb_005976_040 Hb_003023_080--Hb_005976_040 Hb_004143_050 Hb_004143_050 Hb_003023_080--Hb_004143_050 Hb_032920_040 Hb_032920_040 Hb_003023_080--Hb_032920_040 Hb_000805_150 Hb_000805_150 Hb_003023_080--Hb_000805_150 Hb_000245_270 Hb_000245_270 Hb_125884_010--Hb_000245_270 Hb_125884_010--Hb_004143_050 Hb_000506_130 Hb_000506_130 Hb_125884_010--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_125884_010--Hb_029238_020 Hb_125884_010--Hb_000805_150 Hb_019026_030--Hb_004143_050 Hb_003209_040 Hb_003209_040 Hb_019026_030--Hb_003209_040 Hb_027905_010 Hb_027905_010 Hb_019026_030--Hb_027905_010 Hb_001213_140 Hb_001213_140 Hb_019026_030--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_019026_030--Hb_000777_020 Hb_000827_090 Hb_000827_090 Hb_019026_030--Hb_000827_090 Hb_006043_020 Hb_006043_020 Hb_005976_040--Hb_006043_020 Hb_018563_020 Hb_018563_020 Hb_005976_040--Hb_018563_020 Hb_002053_030 Hb_002053_030 Hb_005976_040--Hb_002053_030 Hb_000260_300 Hb_000260_300 Hb_005976_040--Hb_000260_300 Hb_000836_160 Hb_000836_160 Hb_005976_040--Hb_000836_160 Hb_005496_070 Hb_005496_070 Hb_005976_040--Hb_005496_070 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_004143_050--Hb_000245_270 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_004143_050--Hb_000506_130 Hb_004143_050--Hb_029238_020 Hb_010142_040 Hb_010142_040 Hb_032920_040--Hb_010142_040 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_082225_010 Hb_082225_010 Hb_032920_040--Hb_082225_010 Hb_032920_040--Hb_000805_150 Hb_032920_040--Hb_002053_030 Hb_000805_150--Hb_000245_270 Hb_078901_010 Hb_078901_010 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.67341 0.515371 1.32214 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.340171 0.147687 0.0699536 0.163316

CAGE analysis