Hb_125884_010

Information

Type -
Description -
Location Contig125884: 5839-6894
Sequence    

Annotation

kegg
ID rcu:RCOM_0699860
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_012092026.1
description PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A0A067JMR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21761 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125884_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
2 Hb_000245_270 0.1287494457 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_004143_050 0.1334333125 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
4 Hb_003023_080 0.1395632561 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_000506_130 0.1441464776 - - DGCR14-related family protein [Populus trichocarpa]
6 Hb_029238_020 0.1520567345 - - PREDICTED: expansin-like A1 [Jatropha curcas]
7 Hb_000805_150 0.1542150538 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
8 Hb_003800_010 0.1573511602 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
9 Hb_001404_010 0.1610021644 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
10 Hb_052113_020 0.1630337799 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_000003_760 0.1634267681 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
12 Hb_017434_020 0.1650585816 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
13 Hb_116349_090 0.1653060511 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
14 Hb_032920_040 0.1655519294 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
15 Hb_001787_070 0.1707684151 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
16 Hb_019516_050 0.1715998799 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
17 Hb_019026_030 0.1722602312 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
18 Hb_011416_020 0.175788232 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000988_020 0.1777448243 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
20 Hb_004968_050 0.1812580366 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]

Gene co-expression network

sample Hb_125884_010 Hb_125884_010 Hb_000245_270 Hb_000245_270 Hb_125884_010--Hb_000245_270 Hb_004143_050 Hb_004143_050 Hb_125884_010--Hb_004143_050 Hb_003023_080 Hb_003023_080 Hb_125884_010--Hb_003023_080 Hb_000506_130 Hb_000506_130 Hb_125884_010--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_125884_010--Hb_029238_020 Hb_000805_150 Hb_000805_150 Hb_125884_010--Hb_000805_150 Hb_000245_270--Hb_000506_130 Hb_000245_270--Hb_000805_150 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_000245_270--Hb_004143_050 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_004143_050--Hb_000506_130 Hb_004143_050--Hb_029238_020 Hb_003023_080--Hb_019026_030 Hb_005976_040 Hb_005976_040 Hb_003023_080--Hb_005976_040 Hb_003023_080--Hb_004143_050 Hb_032920_040 Hb_032920_040 Hb_003023_080--Hb_032920_040 Hb_003023_080--Hb_000805_150 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_000506_130--Hb_029238_020 Hb_029238_020--Hb_116349_090 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200 Hb_000805_150--Hb_078901_010 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31268 262.879 32.986 105.292 1.06372 2.00681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65803 26.8644 2.20222 13.0494 15.1494

CAGE analysis