Hb_001369_290

Information

Type -
Description -
Location Contig1369: 281000-283200
Sequence    

Annotation

kegg
ID rcu:RCOM_1500640
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002510965.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID B9R9U0
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1500640 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_290 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_026186_010 0.1558481213 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
3 Hb_139569_010 0.2128173131 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
4 Hb_000172_630 0.2394938435 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_088117_010 0.239505724 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_185754_010 0.287569343 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_005694_030 0.2903147538 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]
8 Hb_009252_120 0.2916246587 - - conserved hypothetical protein [Ricinus communis]
9 Hb_162047_010 0.3086981823 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
10 Hb_004453_190 0.3095085997 - - -
11 Hb_001016_020 0.3105178525 - - conserved hypothetical protein [Ricinus communis]
12 Hb_183193_010 0.3106779132 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_011416_020 0.3116040805 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006816_160 0.3174557563 - - hypothetical protein RCOM_1434920 [Ricinus communis]
15 Hb_003018_070 0.3291683071 - - SAUR family protein, partial [Theobroma cacao]
16 Hb_001231_040 0.3310893311 - - hypothetical protein POPTR_0006s06470g [Populus trichocarpa]
17 Hb_125884_010 0.3325213895 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
18 Hb_000216_010 0.332888146 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
19 Hb_005054_250 0.3353878998 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
20 Hb_010028_010 0.338159845 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_290 Hb_001369_290 Hb_026186_010 Hb_026186_010 Hb_001369_290--Hb_026186_010 Hb_139569_010 Hb_139569_010 Hb_001369_290--Hb_139569_010 Hb_000172_630 Hb_000172_630 Hb_001369_290--Hb_000172_630 Hb_088117_010 Hb_088117_010 Hb_001369_290--Hb_088117_010 Hb_185754_010 Hb_185754_010 Hb_001369_290--Hb_185754_010 Hb_005694_030 Hb_005694_030 Hb_001369_290--Hb_005694_030 Hb_026186_010--Hb_000172_630 Hb_026186_010--Hb_088117_010 Hb_026186_010--Hb_139569_010 Hb_026186_010--Hb_185754_010 Hb_004453_190 Hb_004453_190 Hb_026186_010--Hb_004453_190 Hb_139569_010--Hb_004453_190 Hb_000216_010 Hb_000216_010 Hb_139569_010--Hb_000216_010 Hb_139569_010--Hb_088117_010 Hb_001016_020 Hb_001016_020 Hb_139569_010--Hb_001016_020 Hb_000172_630--Hb_088117_010 Hb_005097_010 Hb_005097_010 Hb_000172_630--Hb_005097_010 Hb_000172_630--Hb_185754_010 Hb_000172_630--Hb_001016_020 Hb_088117_010--Hb_185754_010 Hb_009252_120 Hb_009252_120 Hb_088117_010--Hb_009252_120 Hb_006816_160 Hb_006816_160 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_185754_010--Hb_001016_020 Hb_003023_080 Hb_003023_080 Hb_185754_010--Hb_003023_080 Hb_185754_010--Hb_139569_010 Hb_001998_130 Hb_001998_130 Hb_005694_030--Hb_001998_130 Hb_013862_010 Hb_013862_010 Hb_005694_030--Hb_013862_010 Hb_001510_050 Hb_001510_050 Hb_005694_030--Hb_001510_050 Hb_007371_010 Hb_007371_010 Hb_005694_030--Hb_007371_010 Hb_009230_050 Hb_009230_050 Hb_005694_030--Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_005694_030--Hb_008296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.05837 0 0.029394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0233847 0 0 0

CAGE analysis