Hb_004453_190

Information

Type -
Description -
Location Contig4453: 124453-125564
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_190 0.0 - - -
2 Hb_129105_010 0.1798152222 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_139569_010 0.2046658558 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
4 Hb_001016_020 0.2499538121 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021596_060 0.2660685971 - - PREDICTED: peroxidase 56-like, partial [Solanum tuberosum]
6 Hb_026186_010 0.2765327475 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
7 Hb_133661_010 0.2820479874 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
8 Hb_001787_070 0.2822667899 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
9 Hb_000172_630 0.2855344164 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_001404_030 0.2905082483 - - DWNN domain isoform 3 [Theobroma cacao]
11 Hb_007304_100 0.2937792512 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
12 Hb_002571_040 0.2942389195 - - hypothetical protein RCOM_1321060 [Ricinus communis]
13 Hb_005170_020 0.2952272312 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_185754_010 0.2962079415 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_023768_020 0.2988737266 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000866_200 0.3047849716 - - -
17 Hb_009620_010 0.3062363628 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
18 Hb_008092_030 0.3067306875 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
19 Hb_005656_160 0.3072032893 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
20 Hb_001369_290 0.3095085997 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004453_190 Hb_004453_190 Hb_129105_010 Hb_129105_010 Hb_004453_190--Hb_129105_010 Hb_139569_010 Hb_139569_010 Hb_004453_190--Hb_139569_010 Hb_001016_020 Hb_001016_020 Hb_004453_190--Hb_001016_020 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_026186_010 Hb_026186_010 Hb_004453_190--Hb_026186_010 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010 Hb_004112_060 Hb_004112_060 Hb_129105_010--Hb_004112_060 Hb_002984_020 Hb_002984_020 Hb_129105_010--Hb_002984_020 Hb_000733_100 Hb_000733_100 Hb_129105_010--Hb_000733_100 Hb_000599_220 Hb_000599_220 Hb_129105_010--Hb_000599_220 Hb_185506_010 Hb_185506_010 Hb_129105_010--Hb_185506_010 Hb_001369_290 Hb_001369_290 Hb_139569_010--Hb_001369_290 Hb_139569_010--Hb_026186_010 Hb_000216_010 Hb_000216_010 Hb_139569_010--Hb_000216_010 Hb_088117_010 Hb_088117_010 Hb_139569_010--Hb_088117_010 Hb_139569_010--Hb_001016_020 Hb_005170_020 Hb_005170_020 Hb_001016_020--Hb_005170_020 Hb_000111_200 Hb_000111_200 Hb_001016_020--Hb_000111_200 Hb_023768_020 Hb_023768_020 Hb_001016_020--Hb_023768_020 Hb_108670_010 Hb_108670_010 Hb_001016_020--Hb_108670_010 Hb_001404_030 Hb_001404_030 Hb_001016_020--Hb_001404_030 Hb_005306_090 Hb_005306_090 Hb_021596_060--Hb_005306_090 Hb_000676_280 Hb_000676_280 Hb_021596_060--Hb_000676_280 Hb_012753_180 Hb_012753_180 Hb_021596_060--Hb_012753_180 Hb_000707_040 Hb_000707_040 Hb_021596_060--Hb_000707_040 Hb_001329_020 Hb_001329_020 Hb_021596_060--Hb_001329_020 Hb_000172_630 Hb_000172_630 Hb_026186_010--Hb_000172_630 Hb_026186_010--Hb_001369_290 Hb_026186_010--Hb_088117_010 Hb_185754_010 Hb_185754_010 Hb_026186_010--Hb_185754_010 Hb_001584_030 Hb_001584_030 Hb_133661_010--Hb_001584_030 Hb_001355_120 Hb_001355_120 Hb_133661_010--Hb_001355_120 Hb_118094_010 Hb_118094_010 Hb_133661_010--Hb_118094_010 Hb_000603_010 Hb_000603_010 Hb_133661_010--Hb_000603_010 Hb_002157_090 Hb_002157_090 Hb_133661_010--Hb_002157_090 Hb_000261_170 Hb_000261_170 Hb_133661_010--Hb_000261_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0616418 2.69657 0.407183 3.05771 0.476657 0.221889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.36362 0 0 0

CAGE analysis