Hb_185506_010

Information

Type -
Description -
Location Contig185506: 2998-3521
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_002518256.1
description choline monooxygenase, putative [Ricinus communis]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9RWY7
description Choline monooxygenase, putative OS=Ricinus communis GN=RCOM_1706760 PE=4 SV=1
Gene Ontology
ID GO:0005506
description choline chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185506_010 0.0 - - choline monooxygenase, putative [Ricinus communis]
2 Hb_003740_040 0.2369698797 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
3 Hb_001454_080 0.2401927809 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_004525_080 0.241149428 - - Sugar transporter ERD6-like 6 [Morus notabilis]
5 Hb_007044_160 0.246428097 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
6 Hb_001080_120 0.2509625149 - - Spotted leaf protein, putative [Ricinus communis]
7 Hb_000099_190 0.2535686389 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_000844_030 0.2574684516 - - ent-kaurene oxidase, putative [Ricinus communis]
9 Hb_000805_140 0.2594703946 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
10 Hb_001711_080 0.2621231005 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
11 Hb_000365_040 0.2636378239 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
12 Hb_000914_050 0.2670056445 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
13 Hb_002311_330 0.2704743172 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_002374_550 0.2738967422 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
15 Hb_000893_010 0.2739167847 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
16 Hb_000094_190 0.2750663813 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
17 Hb_000797_060 0.2753334014 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
18 Hb_002035_130 0.2764697146 - - plasma membrane H+-ATPase [Hevea brasiliensis]
19 Hb_002243_050 0.2766815017 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
20 Hb_001059_140 0.2777490363 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]

Gene co-expression network

sample Hb_185506_010 Hb_185506_010 Hb_003740_040 Hb_003740_040 Hb_185506_010--Hb_003740_040 Hb_001454_080 Hb_001454_080 Hb_185506_010--Hb_001454_080 Hb_004525_080 Hb_004525_080 Hb_185506_010--Hb_004525_080 Hb_007044_160 Hb_007044_160 Hb_185506_010--Hb_007044_160 Hb_001080_120 Hb_001080_120 Hb_185506_010--Hb_001080_120 Hb_000099_190 Hb_000099_190 Hb_185506_010--Hb_000099_190 Hb_155541_020 Hb_155541_020 Hb_003740_040--Hb_155541_020 Hb_007441_090 Hb_007441_090 Hb_003740_040--Hb_007441_090 Hb_001708_010 Hb_001708_010 Hb_003740_040--Hb_001708_010 Hb_106688_010 Hb_106688_010 Hb_003740_040--Hb_106688_010 Hb_001059_140 Hb_001059_140 Hb_003740_040--Hb_001059_140 Hb_066514_010 Hb_066514_010 Hb_003740_040--Hb_066514_010 Hb_009249_020 Hb_009249_020 Hb_001454_080--Hb_009249_020 Hb_000094_190 Hb_000094_190 Hb_001454_080--Hb_000094_190 Hb_000844_030 Hb_000844_030 Hb_001454_080--Hb_000844_030 Hb_001269_570 Hb_001269_570 Hb_001454_080--Hb_001269_570 Hb_003647_110 Hb_003647_110 Hb_001454_080--Hb_003647_110 Hb_004525_080--Hb_066514_010 Hb_007575_090 Hb_007575_090 Hb_004525_080--Hb_007575_090 Hb_002900_100 Hb_002900_100 Hb_004525_080--Hb_002900_100 Hb_001486_050 Hb_001486_050 Hb_004525_080--Hb_001486_050 Hb_004525_080--Hb_007441_090 Hb_177152_010 Hb_177152_010 Hb_004525_080--Hb_177152_010 Hb_003102_030 Hb_003102_030 Hb_007044_160--Hb_003102_030 Hb_000914_050 Hb_000914_050 Hb_007044_160--Hb_000914_050 Hb_005941_030 Hb_005941_030 Hb_007044_160--Hb_005941_030 Hb_002374_550 Hb_002374_550 Hb_007044_160--Hb_002374_550 Hb_000071_160 Hb_000071_160 Hb_007044_160--Hb_000071_160 Hb_001711_080 Hb_001711_080 Hb_007044_160--Hb_001711_080 Hb_080601_010 Hb_080601_010 Hb_001080_120--Hb_080601_010 Hb_103225_030 Hb_103225_030 Hb_001080_120--Hb_103225_030 Hb_002035_130 Hb_002035_130 Hb_001080_120--Hb_002035_130 Hb_000030_230 Hb_000030_230 Hb_001080_120--Hb_000030_230 Hb_000403_100 Hb_000403_100 Hb_001080_120--Hb_000403_100 Hb_003023_030 Hb_003023_030 Hb_001080_120--Hb_003023_030 Hb_000732_240 Hb_000732_240 Hb_000099_190--Hb_000732_240 Hb_035761_010 Hb_035761_010 Hb_000099_190--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000099_190--Hb_049915_010 Hb_000438_150 Hb_000438_150 Hb_000099_190--Hb_000438_150 Hb_000099_190--Hb_000914_050 Hb_001103_070 Hb_001103_070 Hb_000099_190--Hb_001103_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0893799 0.419787 0.115251 1.38687 0.130382 0.314966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.128083 0 0 0.232747

CAGE analysis