Hb_001454_080

Information

Type -
Description -
Location Contig1454: 60590-61732
Sequence    

Annotation

kegg
ID rcu:RCOM_0680860
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002516910.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID O82089
description Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1
trembl
ID B9RT41
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0680860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_080 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_009249_020 0.2182837418 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
3 Hb_000094_190 0.2202658807 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
4 Hb_000844_030 0.2284192616 - - ent-kaurene oxidase, putative [Ricinus communis]
5 Hb_001269_570 0.2297787528 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
6 Hb_003647_110 0.2370562252 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
7 Hb_185506_010 0.2401927809 - - choline monooxygenase, putative [Ricinus communis]
8 Hb_000197_110 0.2443786554 - - conserved hypothetical protein [Ricinus communis]
9 Hb_054865_160 0.2444757972 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
10 Hb_004525_080 0.245025876 - - Sugar transporter ERD6-like 6 [Morus notabilis]
11 Hb_010812_110 0.2499186962 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_001474_040 0.2502047755 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
13 Hb_000893_010 0.2554237835 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
14 Hb_000805_140 0.2558708594 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
15 Hb_000521_070 0.2588034369 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
16 Hb_000226_070 0.2615279827 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
17 Hb_007483_060 0.2668020045 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
18 Hb_003058_230 0.2668975999 - - copper ion binding protein, putative [Ricinus communis]
19 Hb_002374_550 0.2697250655 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
20 Hb_007575_090 0.2732640695 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]

Gene co-expression network

sample Hb_001454_080 Hb_001454_080 Hb_009249_020 Hb_009249_020 Hb_001454_080--Hb_009249_020 Hb_000094_190 Hb_000094_190 Hb_001454_080--Hb_000094_190 Hb_000844_030 Hb_000844_030 Hb_001454_080--Hb_000844_030 Hb_001269_570 Hb_001269_570 Hb_001454_080--Hb_001269_570 Hb_003647_110 Hb_003647_110 Hb_001454_080--Hb_003647_110 Hb_185506_010 Hb_185506_010 Hb_001454_080--Hb_185506_010 Hb_004545_180 Hb_004545_180 Hb_009249_020--Hb_004545_180 Hb_009838_020 Hb_009838_020 Hb_009249_020--Hb_009838_020 Hb_011021_010 Hb_011021_010 Hb_009249_020--Hb_011021_010 Hb_000197_110 Hb_000197_110 Hb_009249_020--Hb_000197_110 Hb_004899_340 Hb_004899_340 Hb_009249_020--Hb_004899_340 Hb_007044_160 Hb_007044_160 Hb_009249_020--Hb_007044_160 Hb_012762_060 Hb_012762_060 Hb_000094_190--Hb_012762_060 Hb_001754_060 Hb_001754_060 Hb_000094_190--Hb_001754_060 Hb_002026_020 Hb_002026_020 Hb_000094_190--Hb_002026_020 Hb_000914_050 Hb_000914_050 Hb_000094_190--Hb_000914_050 Hb_000094_190--Hb_000844_030 Hb_002374_550 Hb_002374_550 Hb_000094_190--Hb_002374_550 Hb_010812_110 Hb_010812_110 Hb_000844_030--Hb_010812_110 Hb_000330_020 Hb_000330_020 Hb_000844_030--Hb_000330_020 Hb_004738_030 Hb_004738_030 Hb_000844_030--Hb_004738_030 Hb_001474_040 Hb_001474_040 Hb_000844_030--Hb_001474_040 Hb_000844_030--Hb_012762_060 Hb_108216_030 Hb_108216_030 Hb_001269_570--Hb_108216_030 Hb_000521_070 Hb_000521_070 Hb_001269_570--Hb_000521_070 Hb_000365_040 Hb_000365_040 Hb_001269_570--Hb_000365_040 Hb_000035_510 Hb_000035_510 Hb_001269_570--Hb_000035_510 Hb_000893_010 Hb_000893_010 Hb_001269_570--Hb_000893_010 Hb_003623_040 Hb_003623_040 Hb_003647_110--Hb_003623_040 Hb_000173_180 Hb_000173_180 Hb_003647_110--Hb_000173_180 Hb_028707_100 Hb_028707_100 Hb_003647_110--Hb_028707_100 Hb_012787_020 Hb_012787_020 Hb_003647_110--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_003647_110--Hb_000580_210 Hb_007101_070 Hb_007101_070 Hb_003647_110--Hb_007101_070 Hb_003740_040 Hb_003740_040 Hb_185506_010--Hb_003740_040 Hb_004525_080 Hb_004525_080 Hb_185506_010--Hb_004525_080 Hb_185506_010--Hb_007044_160 Hb_001080_120 Hb_001080_120 Hb_185506_010--Hb_001080_120 Hb_000099_190 Hb_000099_190 Hb_185506_010--Hb_000099_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102518 0.459593 0.335998 2.85354 0.954106 0.343054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0869645 0.0796513 0.0175173 0.353958

CAGE analysis